Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16175 75 / 7e-17 Thioesterase superfamily protein (.1) AT1G52191 43 / 3e-05 Thioesterase superfamily protein (.1) AT2G29590 40 / 0.0004 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006834 [exp] 205 / 5e-68 AT3G16175 102 / 4e-28 Thioesterase superfamily protein (.1) Lus10037583 [exp] 183 / 4e-59 AT3G16175 107 / 4e-30 Thioesterase superfamily protein (.1) Lus10006837 [exp] 138 / 3e-41 AT3G16175 114 / 5e-33 Thioesterase superfamily protein (.1) Lus10040701 [exp] 41 / 0.0002 AT2G29590 200 / 7e-67 Thioesterase superfamily protein (.1) Lus10018205 [exp] 41 / 0.0002 AT2G29590 206 / 6e-69 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G051900 [exp] 128 / 1e-37 AT3G16175 125 / 2e-37 Thioesterase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037582 pacid=23167380 polypeptide=Lus10037582 locus=Lus10037582.g ID=Lus10037582.BGIv1.0 annot-version=v1.0 ATGGCGGAAGGAGAAGACACGGTGACGGTAGCAATCAGAGAGCTGGAAGAACGTTCGAAAGGCTTGTACAAAACTCTGGAATCCATATCCGTGAGAGGCC TCCGAATCGTTGAGTCCCGTAAAGGATACCTTCGCTGCCGCTTCGTCGTCTCCGATCGCATTACCGTAGGTCACTCTCTCTGTTTCTTCCTTCTGATCAC TCAGCTCTCTGTTTTGATTGTTGTATACGGACAGGATAAAGACGGGAATTGGCATGTCGGAGCAATGACGACTCTGATTGATGTTGTGAGCCTCTTTGCG ATTTACAGCCTCGTCGGACATGTGAAAGCCTCCGTCGATTTCAACGTCTCTTTCTTCTCCACTGCCAAAGCTTTGGTAAGTAACCCCCCAAACCAGACAA AGAGAATACTTCTCTACATTACATTTGAAATCTCGTATAGAATTTCAGACCATCCTGATTCCGCCGCGCAGGAGGAGGTTGAGTTGGAAGGAAAGGTGGT TGGGGAGAAGGGAAAGCTGACGTCAGTGGTGGTAGAGGTTACAAGGACAAGTAATGGAGAGGTCATTGCGTTTGGTAAACAATGGATGGCTTCCCATAAC AAACGTGTCTACTCTTCAAGCAAGCTTTGA
AA sequence Show only first row Show all	>Lus10037582 pacid=23167380 polypeptide=Lus10037582 locus=Lus10037582.g ID=Lus10037582.BGIv1.0 annot-version=v1.0 MAEGEDTVTVAIRELEERSKGLYKTLESISVRGLRIVESRKGYLRCRFVVSDRITVGHSLCFFLLITQLSVLIVVYGQDKDGNWHVGAMTTLIDVVSLFA IYSLVGHVKASVDFNVSFFSTAKALVSNPPNQTKRILLYITFEISYRISDHPDSAAQEEVELEGKVVGEKGKLTSVVVEVTRTSNGEVIAFGKQWMASHN KRVYSSSKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16175			Thioesterase superfamily prote...		Lus10037582 [exp]	0	1
AT1G66930			Protein kinase superfamily pro...		Lus10008362 [exp]	6.5	0.8181
AT1G69800			Cystathionine beta-synthase (C...		Lus10030788 [exp]	9.9	0.7934
					Lus10033476 [exp]	11.8	0.7974
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10034139 [exp]	13.8	0.7410
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004034 [exp]	15.3	0.7780
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10020877 [exp]	16.1	0.7890
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023534 [exp]	16.6	0.7505
AT5G38260			Protein kinase superfamily pro...		Lus10025492 [exp]	17.3	0.7374
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10023783 [exp]	18.4	0.7705
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Lus10009662 [exp]	19.0	0.7738

Compare expression of checked genes

Lus10037582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.