Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16175 90 / 2e-23 Thioesterase superfamily protein (.1) AT2G29590 52 / 1e-08 Thioesterase superfamily protein (.1) AT1G52191 50 / 4e-08 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006834 [exp] 201 / 7e-67 AT3G16175 102 / 4e-28 Thioesterase superfamily protein (.1) Lus10037582 [exp] 184 / 2e-59 AT3G16175 86 / 5e-21 Thioesterase superfamily protein (.1) Lus10006837 [exp] 168 / 7e-54 AT3G16175 114 / 5e-33 Thioesterase superfamily protein (.1) Lus10018205 [exp] 56 / 5e-10 AT2G29590 206 / 6e-69 Thioesterase superfamily protein (.1) Lus10040701 [exp] 54 / 2e-09 AT2G29590 200 / 7e-67 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G051900 [exp] 149 / 7e-47 AT3G16175 125 / 2e-37 Thioesterase superfamily protein (.1) Potri.009G042100 [exp] 46 / 9e-07 AT2G29590 177 / 8e-58 Thioesterase superfamily protein (.1) Potri.004G134132 [exp] 41 / 8e-05 AT1G04290 166 / 2e-53 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF03061 [flax] [poplar] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Lus10037583 pacid=23167185 polypeptide=Lus10037583 locus=Lus10037583.g ID=Lus10037583.BGIv1.0 annot-version=v1.0 ATGGGAGACGACGACGACGATCACAAAGCAAAGCAGAGTACAGAGGACACAGTGGCGGTATCAAACAGAAGGCTGGAAAAGCGTTCGAAAGGCTTATTTC AAACTCTGGAATCCATCTCCATGAAAGGCCTCCGGATCGTCGAGTCCCGTAAAGGGTTCCTTCGCTGCCGCTTCGTCGTCTCCGATCGCATTACCGTCGA TGGGAATTGGCACGTCGGAGCAATGATGACTCTGATCGACGTTATGGGTTGGTATGCGATCTACAGCCTCGTCGGCCATCGGAAAGCCTCCGTTGATTTC TCCGTCTCTTTCTTATCCACGGCCAGAGCTCTGGAAGAGGTGGAGTTGGAAGGAAAGGTGGTCGGGGAAAAGGGAAGGCTGGCCTCGGTGGTGATAGAGG TTAAACGGACAAGTAACGGAGAGCTCATTGCCGTCGGTAAACAATGGATGTCTGCCCATAGCAAACGTGCCCTCTCTTCAAGCAAGCTTTGA
AA sequence Show only first row Show all	>Lus10037583 pacid=23167185 polypeptide=Lus10037583 locus=Lus10037583.g ID=Lus10037583.BGIv1.0 annot-version=v1.0 MGDDDDDHKAKQSTEDTVAVSNRRLEKRSKGLFQTLESISMKGLRIVESRKGFLRCRFVVSDRITVDGNWHVGAMMTLIDVMGWYAIYSLVGHRKASVDF SVSFLSTARALEEVELEGKVVGEKGRLASVVIEVKRTSNGELIAVGKQWMSAHSKRALSSSKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16175			Thioesterase superfamily prote...		Lus10037583 [exp]	0	1
AT3G13510			Protein of Unknown Function (D...		Lus10010315 [exp]	9.7	0.8004
AT4G33670			NAD(P)-linked oxidoreductase s...		Lus10012456 [exp]	14.1	0.8095
AT2G17695			unknown protein		Lus10041839 [exp]	14.1	0.8203
AT5G51140			Pseudouridine synthase family ...		Lus10022437 [exp]	14.2	0.8104
AT5G25080			Sas10/Utp3/C1D family (.1)		Lus10026882 [exp]	18.5	0.7788
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10020948 [exp]	19.8	0.7904
AT4G10360			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10034433 [exp]	21.2	0.7381
AT3G56140			Protein of unknown function (D...		Lus10017422 [exp]	22.4	0.7566
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10024408 [exp]	26.0	0.7562
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	28.2	0.7674

Compare expression of checked genes

Lus10037583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.