Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16590 210 / 2e-69 REV7, ATREV7 DNA-binding HORMA family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006836 [exp] 342 / 1e-120 AT1G16590 241 / 9e-81 DNA-binding HORMA family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G439000 [exp] 229 / 7e-77 AT1G16590 300 / 1e-104 DNA-binding HORMA family protein (.1) Potri.011G142501 [exp] 90 / 1e-23 AT1G16590 106 / 5e-30 DNA-binding HORMA family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0651 [flax] [poplar] Mad2 PF02301 [flax] [poplar] HORMA HORMA domain
Representative CDS sequence Show only first row Show all	>Lus10037584 pacid=23167091 polypeptide=Lus10037584 locus=Lus10037584.g ID=Lus10037584.BGIv1.0 annot-version=v1.0 ATGGAGACCAGAGATCAACAATCCACAGAAATGGAGATCAAAGAGAATCAGGCTACCGAAATGGAGAGCGGAGATAATGAATCCACCGAAGAGGAGATCG CTAGGATTCTGGTTGAGTTCCTTGAAGTTGCAATCACGTCAATCATTTTCCTCAAAAGGGTGTACCCTGCCGGCGCATTTGAGCGGAGGAGGTATATGAA CGCGGTGGTTCAGATAGCTAAGGAGCCACTGCTCCGAGATTATATTCACTCTTCCGTTGCTGCTCTCTTACCATTCATCGAAAAGCTAAGGATGAACTTG TCGTCTGGAAAGAAGGTTGAAGGGGTTGATCTTGAGTTCGCTCTCCGGGCCTTGTTGATCAAACTTCCCGCCTCGGAATCCCTCACCAAACCTCTTCCTC CTGATTGCAGGTGGGAAATAACAGCTTACTTCAGGAAGCTTCCTGAGGTTGGATCTAGCGATGCGGCAGATGTGTGGATCCCGACCGATACGAAGAAGTT GGAACACCCGCCGCTAATTACTCCAATCAAGTCTATGAACACCCAGCCTTTGTCTCTGCAGCTGTATGTGGAACATCCCAATTCATCATGA
AA sequence Show only first row Show all	>Lus10037584 pacid=23167091 polypeptide=Lus10037584 locus=Lus10037584.g ID=Lus10037584.BGIv1.0 annot-version=v1.0 METRDQQSTEMEIKENQATEMESGDNESTEEEIARILVEFLEVAITSIIFLKRVYPAGAFERRRYMNAVVQIAKEPLLRDYIHSSVAALLPFIEKLRMNL SSGKKVEGVDLEFALRALLIKLPASESLTKPLPPDCRWEITAYFRKLPEVGSSDAADVWIPTDTKKLEHPPLITPIKSMNTQPLSLQLYVEHPNSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Lus10037584 [exp]	0	1
AT3G57570			ARM repeat superfamily protein...		Lus10026305 [exp]	3.7	0.6625
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10033125 [exp]	5.5	0.6418
AT2G30480			unknown protein		Lus10034450 [exp]	14.5	0.6177
AT5G24810			ABC1 family protein (.1.2)		Lus10026971 [exp]	34.5	0.6283
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007172 [exp]	57.5	0.5825
AT1G61140		EDA16	embryo sac development arrest ...		Lus10018465 [exp]	81.2	0.5664
AT3G19340			Protein of unknown function (D...		Lus10012584 [exp]	85.2	0.5507
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10009830 [exp]	94.3	0.5722

Compare expression of checked genes

Lus10037584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.