Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21360 444 / 2e-157 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006839 [exp] 563 / 0 AT3G21360 435 / 3e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006838 [exp] 431 / 2e-152 AT3G21360 397 / 5e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025818 [exp] 423 / 6e-149 AT3G21360 496 / 6e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038283 [exp] 412 / 4e-145 AT3G21360 494 / 1e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006835 [exp] 400 / 2e-140 AT3G21360 375 / 4e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025819 [exp] 358 / 1e-123 AT3G21360 428 / 2e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038282 [exp] 299 / 1e-101 AT3G21360 367 / 2e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006840 [exp] 240 / 5e-80 AT3G21360 174 / 8e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035053 [exp] 187 / 1e-56 AT3G21360 246 / 4e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190100 [exp] 448 / 3e-159 AT3G21360 501 / 5e-180 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131200 [exp] 229 / 2e-73 AT3G21360 250 / 2e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131300 [exp] 219 / 1e-69 AT3G21360 241 / 3e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02668 [flax] [poplar] TauD Taurine catabolism dioxygenase TauD, TfdA family
Representative CDS sequence Show only first row Show all	>Lus10037585 pacid=23167015 polypeptide=Lus10037585 locus=Lus10037585.g ID=Lus10037585.BGIv1.0 annot-version=v1.0 ATGGCGACCCATTTCCACGAAACGCAGATCCCACACCAGAAACACTTCCCCAACTCTCCACCCTTCCCCGCCGTCCTAACTCCACCTCCATCATCATCAT CATCATCTCTCGCTGACTTCACCACCGCAGTCAAATCCCAAACCCACTACCTCGAATCCTTACTCCACAAAACAGGGGCGATCCTATTCAGAAATTTCCC ACTCTCCACAGCTGCCGAATTCAACCAATTAGTCGAATCCTTCGGGTTCCCTGACTACCCTTATCTCGGCGGCGCTGCCTCCAGGACCAGAGTCGTCGGC CGGGTGTTCACCGCCAACGAGTCGCCGCCGGATCAGAAGATCCCGTTCCACCACGAGATGTCTCACGTCCCTGATTTTCCGACGAAGCTGATGTTCTTCT GCGAGGAGGAGCCCGGGAGCGGCGGGGAGACTCCGGTGGTGTTGAGCCATTTGGTTTACGAGAGGATGAAGGAGGAGTTTCCTGAGTTTGTGGGGAAGCT TGAAGATGAAGGTCTCGTTTCCACCAGAGTTTTGGGTGAAAACGACGACGTATCCTCTGCTATCGGCCGTGGCTGGAAGTCCACTTTCTCTACCGATGAT AGACACGTGGCCAAGCAAAGGGCGGAAAACTTAGGGATGAAGCTGGAGTGGATCACCGAAGTAGACAACGAAGGCGGATCGGTGGCCAAGACATCAATCG GTCCGATCCCAGCAATCAAATTCGACGAGTCGAGGAACCGCAAAGTCTGGTTCAACGCATTGGTGGCGAGCTATACGGCTTTTGGCGACAAAAGGAACGA CCCGGCCAAGTCCATCGCGTTCGGAGGCGGGGATCCTCTGCCGAGCGACGCGGTGTACGGCTGCCTGAGGATCATGGAAGAATTGAGCGTCGCGGTTCCT TGGCAGAAGGGCGACGTCCTGCTGATCGATAATTGGGCCGTTCTTCACTCTCGTAAGCTCTTCACCCCGCCTCGTCGCGTTCTGGCTGCACTCTGTAAGT AA
AA sequence Show only first row Show all	>Lus10037585 pacid=23167015 polypeptide=Lus10037585 locus=Lus10037585.g ID=Lus10037585.BGIv1.0 annot-version=v1.0 MATHFHETQIPHQKHFPNSPPFPAVLTPPPSSSSSSLADFTTAVKSQTHYLESLLHKTGAILFRNFPLSTAAEFNQLVESFGFPDYPYLGGAASRTRVVG RVFTANESPPDQKIPFHHEMSHVPDFPTKLMFFCEEEPGSGGETPVVLSHLVYERMKEEFPEFVGKLEDEGLVSTRVLGENDDVSSAIGRGWKSTFSTDD RHVAKQRAENLGMKLEWITEVDNEGGSVAKTSIGPIPAIKFDESRNRKVWFNALVASYTAFGDKRNDPAKSIAFGGGDPLPSDAVYGCLRIMEELSVAVP WQKGDVLLIDNWAVLHSRKLFTPPRRVLAALCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10037585 [exp]	0	1
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021028 [exp]	3.2	0.9717
					Lus10027376 [exp]	3.9	0.9739
AT1G34300			lectin protein kinase family p...		Lus10012659 [exp]	5.4	0.9539
					Lus10031841 [exp]	5.5	0.9702
AT1G60680		AGD2	NAD(P)-linked oxidoreductase s...		Lus10004399 [exp]	7.4	0.9671
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032641 [exp]	9.4	0.9624
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10019686 [exp]	11.1	0.9506
AT5G10530			Concanavalin A-like lectin pro...		Lus10033781 [exp]	12.2	0.9592
AT2G48020			Major facilitator superfamily ...		Lus10008184 [exp]	15.0	0.9642
AT4G18380			F-box family protein (.1.2)		Lus10040978 [exp]	15.0	0.9497

Compare expression of checked genes

Lus10037585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.