Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51940 804 / 0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 267 / 2e-80 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT3G24790 226 / 1e-67 Protein kinase superfamily protein (.1) AT3G07070 221 / 3e-65 Protein kinase superfamily protein (.1) AT5G02800 219 / 5e-65 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT4G32710 219 / 1e-64 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1) AT1G20650 218 / 2e-64 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G20530 216 / 8e-64 Protein kinase superfamily protein (.1) AT1G69790 216 / 1e-63 Protein kinase superfamily protein (.1) AT3G24550 222 / 3e-63 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006841 [exp] 1237 / 0 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10004625 [exp] 334 / 3e-105 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10026689 [exp] 333 / 3e-105 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10027677 [exp] 322 / 7e-101 AT1G51940 320 / 7e-101 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10035301 [exp] 282 / 7e-86 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10030022 [exp] 274 / 2e-83 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035302 [exp] 274 / 8e-80 AT3G21630 706 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10019897 [exp] 225 / 3e-67 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10011148 [exp] 225 / 5e-67 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190200 [exp] 907 / 0 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G081601 [exp] 352 / 2e-112 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 351 / 3e-112 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G187500 [exp] 346 / 3e-110 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 323 / 2e-101 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.002G226600 [exp] 280 / 2e-85 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.014G156400 [exp] 278 / 2e-84 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G010000 [exp] 277 / 6e-84 AT3G21630 673 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.006G133300 [exp] 223 / 5e-66 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.011G000600 [exp] 221 / 2e-65 AT3G20530 434 / 6e-152 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10037586 pacid=23167297 polypeptide=Lus10037586 locus=Lus10037586.g ID=Lus10037586.BGIv1.0 annot-version=v1.0 ATGAATCACTTGCTTCAACTCTTGATTCCCCTGCTCCTCCTCCTACTATGGCGGCTCCCTCTCAGAGCCACCCAATCCATCCCCAAACCCATGTACTGTA CGGAAACATCCCGCCTCTGCACCTCTTTCCTAGCTTTCAAACCAGCCAAAGACCAGACCTTTGGAGTTATCCAGAGCATGTTCGACGTATTGCCTCAGGA CATAACAGTAGAAGGCGGGTCGAGTGAGTATGTGTTCGTGAGGAAAAACTGCTCTTGCCTTTCCGACGACAGAGTGTCGTATTACGCCACTAATTCCACT TACACGGTGAAATCCAACGGCGGGTTAGTGAACGACGTCGTGTCGGGCGCCTATGATGGGCTTGCTTTAGTGTTTCCCAACAACAATGTTACCAGCAAGA GGAATGCTAGAGCTGGAGCAGTGGTGTCGGTGAGGCTGTTGTGTGGGTGTTCCAGTGGGCTGTGGAATTACTTGATGAGCTATGTGATGGAAGAAGGTGA TTCTGTGGAATCTTTATCCAGCAGGTTTGGAGTCAGCATGGCTAGCATTGAAGGTGTGAATGGGATCAACAGCCCTGATAATATCACTGTCGGTTCTGTC TACTATGTCCCTCTCAACTCAGCTCCTGGTGAACCTTATTCAGTTGAGAGTGACATCCCTCCTGTGATTGCTCCTTCATCTTCTGATGCTGCTATCAACT CGTCTGCTTCAGGAAATCCGGAGAAGAAGAAGGGTCATGTGTCATATGCATGGATCATTATAGGACTAGGGATTGTCCTTGTTGTAATTGTCTTTTTCAT AGTAATATGTGCCTGCTTCAAGTGTTCGAGCTGCTGTTCTAAAGACGAAGAAGGGAGCCATGCTGCTGCAAACACTGGTGGGGGGAAGGTTTCTCATAGT TTTCAAATTCTACGAAAGCCCAGCTTCTGCTGTGGTTCAGCACGGTACACCGGCGCCAACTCAGAAGAGTGGAAGCAAACCAACGGCGAGACTAGTAACT ACCACCACAACATCACTATACCTAGAGGTTTGGAAACCGATGTGTTTGACATGGAGAAGCCGGTGGTCTTCTCGTATGAAGAGATACACTTTGCAACTGA TGGATTCTCTGATTCGAATCTCCTCGGACATGGAACTTTCGGTTCTGTGTATCATGGCCACATTCCTGACCAGGAAGTGGCTATTAAGAGAATGACTGCC ACAAAAACCAAGGAATTTTTGGCTGAGATGAAGGTTCTCTGCAAGGTCCATCATGCTAATCTGGTAGAACTGATTGGCTACGCAGCTACTGATGACGAAC TCTTCCTCGTTTACGAGTATGCTCAAAAGGGTTCTCTCCGAAGCCATTTACATGATCCTCAGAACAAGGGTCAAACATCCCTTTCTTGGACTATGAGACT ACAGATAGCTCTGGATGCAGCAAGGGGGCTCGAGTATATCCACGAGCACACGAAAACTCACTATGTCCATCGCGATATCAAGTCAAGCAACATCCTACTC GATGGTTCTTTCCGGGCTAAGATTTCAGATTTCGGACTGGCGAAACTTGTTGGCACAGCAGGCGATGGCGAAGCTACAGTAACCAAAGTAGTGGGGACCT TTGGTTATCTGGCTCCAGAATACTTGAGAGACGGTCTCGCCACTTCCAAAAGTGACGTGTATGCATTCGGTGTTGTTCTGTTTGAGCTTATATCCGGCAA GGAAGCTGTGATACGAAGCGAGGGAGGTGCATCCAAGAATCCTGATCGACGTTCATTAGCATCAACGATGCTAGCTGCTCTTAGAAGCTCACCCGAGTCG ATGACAGCAGCGAGCTTGAAAGACCACATTGATGCTAACATGATGGATTTGTACCCCCATGATTGCTTGCTCAAGGCCGTGATGGTGGCGAAGCATTGCG TGGAGGACGATCCGATCCTGAGGCCGGACATGAAGCAAGTGGTGATGTCGCTGTCACAGATTCTTTTGTCGTCGATCGAATGGGAAGCGACTCTTGCCGG GAACAGTCAGGTTTTTAGTGGCCTTGTCCAGGGAAGATGA
AA sequence Show only first row Show all	>Lus10037586 pacid=23167297 polypeptide=Lus10037586 locus=Lus10037586.g ID=Lus10037586.BGIv1.0 annot-version=v1.0 MNHLLQLLIPLLLLLLWRLPLRATQSIPKPMYCTETSRLCTSFLAFKPAKDQTFGVIQSMFDVLPQDITVEGGSSEYVFVRKNCSCLSDDRVSYYATNST YTVKSNGGLVNDVVSGAYDGLALVFPNNNVTSKRNARAGAVVSVRLLCGCSSGLWNYLMSYVMEEGDSVESLSSRFGVSMASIEGVNGINSPDNITVGSV YYVPLNSAPGEPYSVESDIPPVIAPSSSDAAINSSASGNPEKKKGHVSYAWIIIGLGIVLVVIVFFIVICACFKCSSCCSKDEEGSHAAANTGGGKVSHS FQILRKPSFCCGSARYTGANSEEWKQTNGETSNYHHNITIPRGLETDVFDMEKPVVFSYEEIHFATDGFSDSNLLGHGTFGSVYHGHIPDQEVAIKRMTA TKTKEFLAEMKVLCKVHHANLVELIGYAATDDELFLVYEYAQKGSLRSHLHDPQNKGQTSLSWTMRLQIALDAARGLEYIHEHTKTHYVHRDIKSSNILL DGSFRAKISDFGLAKLVGTAGDGEATVTKVVGTFGYLAPEYLRDGLATSKSDVYAFGVVLFELISGKEAVIRSEGGASKNPDRRSLASTMLAALRSSPES MTAASLKDHIDANMMDLYPHDCLLKAVMVAKHCVEDDPILRPDMKQVVMSLSQILLSSIEWEATLAGNSQVFSGLVQGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51940			protein kinase family protein ...		Lus10037586 [exp]	0	1
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10009907 [exp]	1.4	0.8925
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	1.4	0.8960
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	2.4	0.8886
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	3.5	0.8405
AT1G74160			unknown protein		Lus10034678 [exp]	4.5	0.8776
AT2G41640			Glycosyltransferase family 61 ...		Lus10042044 [exp]	4.5	0.8839
AT1G67750			Pectate lyase family protein (...		Lus10006456 [exp]	5.5	0.8452
AT1G54200			unknown protein		Lus10026463 [exp]	6.5	0.8375
AT5G48460			Actin binding Calponin homolog...		Lus10038235 [exp]	8.1	0.8443
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10037945 [exp]	8.7	0.8363

Compare expression of checked genes

Lus10037586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.