Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16500 238 / 7e-78 AUX_IAA IAA26, PAP1 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) AT1G51950 211 / 2e-67 AUX_IAA IAA18 indole-3-acetic acid inducible 18 (.1) AT5G25890 127 / 8e-36 AUX_IAA IAR2, IAA28 IAA-ALANINE RESISTANT 2, indole-3-acetic acid inducible 28 (.1) AT4G28640 122 / 4e-33 AUX_IAA IAA11 indole-3-acetic acid inducible 11 (.1.2.3) AT4G29080 120 / 1e-31 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT2G33310 117 / 2e-31 AUX_IAA IAA13 auxin-induced protein 13 (.1.2.3) AT3G04730 115 / 8e-31 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT1G04550 114 / 2e-30 AUX_IAA BDL, IAA12 indole-3-acetic acid inducible 12, BODENLOS, AUX/IAA transcriptional regulator family protein (.1.2) AT2G22670 116 / 3e-30 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT1G04100 112 / 3e-29 AUX_IAA IAA10 indoleacetic acid-induced protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006842 [exp] 451 / 5e-161 AT3G16500 226 / 3e-73 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10038285 [exp] 259 / 1e-85 AT3G16500 224 / 3e-72 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10038284 [exp] 257 / 8e-84 AT3G16500 223 / 6e-71 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10025817 [exp] 251 / 6e-82 AT3G16500 231 / 1e-74 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10023719 [exp] 126 / 5e-34 AT2G33310 223 / 4e-72 auxin-induced protein 13 (.1.2.3) Lus10014464 [exp] 123 / 9e-33 AT2G33310 231 / 4e-75 auxin-induced protein 13 (.1.2.3) Lus10019241 [exp] 121 / 4e-32 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10034962 [exp] 118 / 7e-31 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10028222 [exp] 115 / 3e-30 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G048100 [exp] 273 / 1e-90 AT3G16500 224 / 4e-72 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.001G190300 [exp] 250 / 1e-81 AT3G16500 235 / 3e-76 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.018G057000 [exp] 191 / 1e-58 AT3G16500 192 / 3e-59 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.006G236200 [exp] 181 / 5e-55 AT3G16500 184 / 3e-56 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.010G065200 [exp] 132 / 2e-36 AT2G33310 243 / 4e-80 auxin-induced protein 13 (.1.2.3) Potri.008G172400 [exp] 130 / 9e-36 AT2G33310 246 / 4e-81 auxin-induced protein 13 (.1.2.3) Potri.002G256600 [exp] 127 / 2e-34 AT4G28640 191 / 6e-60 indole-3-acetic acid inducible 11 (.1.2.3) Potri.002G108000 [exp] 119 / 6e-31 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.006G161400 [exp] 115 / 9e-30 AT4G29080 293 / 2e-98 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.013G041400 [exp] 113 / 9e-30 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10037587 pacid=23167125 polypeptide=Lus10037587 locus=Lus10037587.g ID=Lus10037587.BGIv1.0 annot-version=v1.0 ATGGAGGGTGGTTGTTCAAAGGCTGGTGAAGCTTGTCCTAAGTTGCTGGATTTGATCTCCAAGGAAAGGGTAGTTTCTAACGGGAATGGAGATTTCGTTG GTAATGGTTGTCCTTCTTCTTCAGTGGAGAAGAAGCTTGAGCTAAGGCTTGGTCTTCCTGGTGATGATGAATGGTTCTCTATGGGATTTTTCAGCCATGG AAACAAAATTTATGCTCCTCATGAGAAGTCACAAGGGAAGAAAGAATCTTCCTCAAAACTCTGTTGCTCTAAAGTAGTAGACTTGAATCAGACTACTACT GCAGAAAAGAAACCATTTTCACCACAAGCTCCTGCTGCTGCTCCCCCTACTCCTGCACATACAGCTGTCCCCAACATCTCTCAGAAAAGAACTGCTCCAG GGCCAGTGGTGGGATGGCCTCCAATCCGTTCATTTAGGAAGAATCTAGCGGGAAGCTCTTCCAAGCCATCATCACATGATTCCCAGAATGATGGGAGCCC AAACAAGAAGGCTGCTAGTGAGAAATTACTACCAGTTGAAGTTTGCAAGAGAGGTATGTTCGTTAAGATCAACATGGATGGTGTCCCCATTGGGAGGAAA GTGGATCTTGCAGCCTATGCCAGCTACAGTAGACTCTCCACTGCTGTTGATGAGCTTTTCAGAGATCTACTTGCAGCTCAAAGAGATTCCAGTGTTGGTG GAATGATGAACAAGCAGGGAGAGGAAGATGAGAAAGCAATTATTACAGGGTTAATGGATGGGAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGG AGACAGGATGCTTGTTGGAGATGTCCCATGGCACATGTTTGTGTCTACTGTGAAGAGACTTCGAGTTCTGAAGAGCTCTGAGGTTTCTGCTCTACTGAAA TGA
AA sequence Show only first row Show all	>Lus10037587 pacid=23167125 polypeptide=Lus10037587 locus=Lus10037587.g ID=Lus10037587.BGIv1.0 annot-version=v1.0 MEGGCSKAGEACPKLLDLISKERVVSNGNGDFVGNGCPSSSVEKKLELRLGLPGDDEWFSMGFFSHGNKIYAPHEKSQGKKESSSKLCCSKVVDLNQTTT AEKKPFSPQAPAAAPPTPAHTAVPNISQKRTAPGPVVGWPPIRSFRKNLAGSSSKPSSHDSQNDGSPNKKAASEKLLPVEVCKRGMFVKINMDGVPIGRK VDLAAYASYSRLSTAVDELFRDLLAAQRDSSVGGMMNKQGEEDEKAIITGLMDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSEVSALLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10037587 [exp]	0	1
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10006842 [exp]	1.0	0.9428
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10034441 [exp]	2.4	0.8408
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10027627 [exp]	3.2	0.8127
AT3G43660			Vacuolar iron transporter (VIT...		Lus10031922 [exp]	4.0	0.7941
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10022786 [exp]	4.0	0.8107
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	4.2	0.8426
AT4G38810			Calcium-binding EF-hand family...		Lus10007567 [exp]	4.5	0.8336
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10037069 [exp]	4.5	0.8048
AT1G13970			Protein of unknown function (D...		Lus10030425 [exp]	6.7	0.8105
AT3G61920			unknown protein		Lus10002686 [exp]	8.8	0.8109

Compare expression of checked genes

Lus10037587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.