Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29130 660 / 0 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT2G19860 655 / 0 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT1G50460 438 / 4e-150 ATHKL1, HKL1 hexokinase-like 1 (.1) AT1G47840 408 / 3e-138 HXK3 hexokinase 3 (.1) AT3G20040 408 / 3e-138 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1) AT4G37840 324 / 9e-106 HKL3 hexokinase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006843 [exp] 875 / 0 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10038287 [exp] 820 / 0 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10025815 [exp] 696 / 0 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10012946 [exp] 616 / 0 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10024336 [exp] 478 / 1e-165 AT1G47840 646 / 0.0 hexokinase 3 (.1) Lus10002041 [exp] 472 / 3e-163 AT1G47840 643 / 0.0 hexokinase 3 (.1) Lus10005019 [exp] 469 / 5e-162 AT1G50460 670 / 0.0 hexokinase-like 1 (.1) Lus10019038 [exp] 456 / 5e-157 AT1G50460 636 / 0.0 hexokinase-like 1 (.1) Lus10034980 [exp] 344 / 4e-115 AT2G19860 334 / 6e-113 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190400 [exp] 726 / 0 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.018G088300 [exp] 695 / 0 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.001G254800 [exp] 484 / 7e-168 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.005G238600 [exp] 471 / 5e-163 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.009G050000 [exp] 469 / 5e-162 AT1G50460 576 / 0.0 hexokinase-like 1 (.1) Potri.007G009300 [exp] 405 / 2e-137 AT4G37840 520 / 0.0 hexokinase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF03727 [flax] [poplar] Hexokinase_2 Hexokinase CL0108 [flax] [poplar] Actin_ATPase PF00349 [flax] [poplar] Hexokinase_1 Hexokinase
Representative CDS sequence Show only first row Show all	>Lus10037588 pacid=23167201 polypeptide=Lus10037588 locus=Lus10037588.g ID=Lus10037588.BGIv1.0 annot-version=v1.0 ATGGACAAGAAGGTGGTGGTGACGACCGTGGTCTGCGTGGCGGCAGTCGCCGGCGTCGTGGCCGCCGGAGTGGTTCTCAAGAAGAACATGAAGAAGGACG GCAAGTGGGTTCGGGCGATGGAGATCGTTAGAGAGCTGGAAGACAAATGCGGGACGTCGACTGCCAGATTGAAGCAGGTCGCCGATGCGATGGTGGTGGA GATGCACGCTGGGCTAGCGTCGGAAGGTGGAAGCAAGCTCAAGATGCTTATTAGCTATGTCGACAATTTGCCCACCGGTGACGAGTCGGGGTTGTATTAT GCATTGGATCTCGGTGGAACGAATTTTCGCGTACTACGGGTACATTTAGGGGGACGGAATGGGGGTATTGTGAATCAAGAGTTTGCCGAGGTGCCAATCC CTTCTGAGTTAATGACTGGGGCTCCAGATGCACTCTTTGATTACATTGCAGCCGAGCTTGCAAAGTTTGTTGCTGAAGAATCTCAGGAACATGAGCTTCC TCCAGGGAGAAAGAGAGAGTTAGGTTTCACCTTTTCGTTCCCTGTCAATCAGACTTCCATTGCTTCAGGCACTCTCGTTCGGTGGACAAAGGGCTTTTCG ATCGATGAACTGGTTGGCCAAGATGTCGTGACAGAACTGTCCAGAGCAATGACGAGGCAGAACCTCGAAATGCACGTCTCAGCTTTGGTGAATGATACAG TTGGGACCCTAGCTGGAGGGAGATACACCAACAAGGATGTTGATGCTGCTGTTATCTTAGGTACAGGAACAAATGCTGCTTACGTTGAGCGAGCACAAGC TATACCGAAATGGCACGGTGCTCTACCGAAATCAGGAGAAATGGTCATCAATATGGAATGGGGCAATTTCAAGTCATCGCATCTTCCTTTAACAGAGTTT GATAACGCACTTGATGTCGACAGCTTGAATCCTGGTGAACAGATTTTCGAGAAAATCATTTCTGGTATGTACTTGGGGGAAATTGTACGCAGAGTTCTGC TAAAGCTTGCTGAAGAAGCTTCATTTTTCGGTGATATCGTGCCGGCTAAACTCAAAGTTCCTTTTGTACTGAGGACGCCCGTGATGTCAGCAATGCACCA CGACTCATCCTCGGATCTTAAAGTCGTCGCCAGTAAATTGAAGGATATTCTTGAGATACATGGTACATCCCTTAGGACGAGAAAGGCGATCGTCCAGGTA TGCAACATCATCGCCACACGCGGGGCGCGTCTGGCTGCTGCCGGAGTGGTGGCCATACTGAGGAAGATGGGGAAGGACACATTGAAAGAAGAGGAAGGCG ACAAAAAGAAGACGGTGGTCGCTATGGACGGTGGTCTGTACGAGCACTACAGCGAGTACAGCAAGTGCCTGGAGACCACCCTAGCCGAGTTGCTTGGAGA CGAAGTTTCAGGGACCGTGCAGGTCGTGCATGCGAACGATGGATCGGGGATTGGGGCAGCCCTTCTCGCTGCCTCGCATTCGCAGTATCTTTGA
AA sequence Show only first row Show all	>Lus10037588 pacid=23167201 polypeptide=Lus10037588 locus=Lus10037588.g ID=Lus10037588.BGIv1.0 annot-version=v1.0 MDKKVVVTTVVCVAAVAGVVAAGVVLKKNMKKDGKWVRAMEIVRELEDKCGTSTARLKQVADAMVVEMHAGLASEGGSKLKMLISYVDNLPTGDESGLYY ALDLGGTNFRVLRVHLGGRNGGIVNQEFAEVPIPSELMTGAPDALFDYIAAELAKFVAEESQEHELPPGRKRELGFTFSFPVNQTSIASGTLVRWTKGFS IDELVGQDVVTELSRAMTRQNLEMHVSALVNDTVGTLAGGRYTNKDVDAAVILGTGTNAAYVERAQAIPKWHGALPKSGEMVINMEWGNFKSSHLPLTEF DNALDVDSLNPGEQIFEKIISGMYLGEIVRRVLLKLAEEASFFGDIVPAKLKVPFVLRTPVMSAMHHDSSSDLKVVASKLKDILEIHGTSLRTRKAIVQV CNIIATRGARLAAAGVVAILRKMGKDTLKEEEGDKKKTVVAMDGGLYEHYSEYSKCLETTLAELLGDEVSGTVQVVHANDGSGIGAALLAASHSQYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10037588 [exp]	0	1
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10006843 [exp]	2.4	0.9156
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	2.6	0.9411
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	4.0	0.9285
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	6.3	0.9192
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Lus10006076 [exp]	6.7	0.9159
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10000787 [exp]	8.4	0.9138
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10039054 [exp]	9.5	0.9005
AT4G08810		SUB1	calcium ion binding (.1)		Lus10013761 [exp]	11.4	0.9233
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	11.8	0.8957
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	11.8	0.9108

Compare expression of checked genes

Lus10037588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.