Plant FIBer expression Database

Lus10037590 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006845
[exp]
694 / 0 AT1G16630 56 / 9e-08 unknown protein
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10037590 pacid=23167309 polypeptide=Lus10037590 locus=Lus10037590.g ID=Lus10037590.BGIv1.0 annot-version=v1.0
ATGTCCGACCCTAATCAGCCGTCGCCGGCCAAGAAGAAACTCCGTCCGCCGTCCCTGAAAGCAGACGGAGATGAGAATTTGTCGAGTGTAAAGAAATCGC
CGATGAAGCGTTTCATGTCCCCGACGATATCGCGAGCTGCAAAGGTCAATCCGGTTCCAAGAACAAAGATTCCAGCGGCGGAACGAAATGAATCTCCGGC
CAAGTTGGCTTCTCCGATAGCTTCGGGTTTCAATTTGAATTACGACGGATTCAGGGATGAGAACGAGAAGGAACGCAACAACAACGACGGTGATAACAAC
AACCTAATCACTGACGGTTCATCGCCGATTCCGTCGAGCAATTACCTTTCCGTTAGCAGAAGTGATGGAGATGAGAGCTTGTCGAGTGTAAAGAAATCGC
CGATGAAGCATTTCTTGTCACCGACGGCCAATCAGCTTTCAAGAACAAAGATTCTAGCGGAACGAAATGAATCTCCTTCGGTCAAGTTCGTTCCTCCTCC
TCCTCCTCCTCCTCCACCGAGAGCTTCAAGTTTCAAGCTGAATAATGGCGGATTCAGGAATGAGAATGACAAGGAATGGAACAACAACACCAACATCGAC
GACAACCTAATTACTGGTGATTCGTTGCCGATGATTCCTTACAATCCGGCGAGTAATTACCTCTCCCCGAGGCCGAAATTCCTGAGGTACAATCCACAGC
GAAGAAGCCAGATCTTGCAGAGAAGGGTGGAGCTGGAGGAGGAGGATGTGTTGGATCTGGAGCAAGATACTACAGACACTGAGTCTGACATTTCCCCTGG
TAATGCTGCTGCTCCTCCTTTGTCTCCGGCCAAGGACGATGAAGTGGATGGTGCGATCGAGGAGGAATCCGGCGAGGATGAATTCGAAGAAGATGATGAG
GGAAGTTCGGTTTTCGGATGGGTGTTTCAGTTTCTGCTTCTGATGATGGTTTTGATAGCTTCCACTTGGTACATTACTTCAATGAACAATCACCCGGTTG
AAGCCGACTATCAAGAGATTCACAGCTGCCACCCCCGAGTTGGGTTTGGGAGGAAGATAGAGGTTAATGGAAGCTGCTTGTTAGTTGGAGAAGGAATAGT
GTTACGACAACAACAGCCTGTTGCTGCTCCTTCCTTCCTTGTGGATGTGGAGCAGAAAGGAGATGGAGAGGAAGAAGAAGCTACGGAGGAGGTTTCGGAA
GGAGGGATGCTGGTGGTCGAGCTCCTCCAGCCTTCTGAGGATATGGAGATTCAAGAGGAAGAAGAGAATTTCATAGATATTACTGAAGATGAGACTAATG
AAGCTCCTTACACAGAAGTTCTCCATCCTGCAGCTATGGAAGTTCTGGAAGAAGAGAGGTTGATGGAAGTGGAGCAGAGAGGAGAAGAAGAAGAAGAAGC
AGCTATGGAGGAGGTTTCAGAAGAAGGAGGGATAGTACTGGTAGTTGATGAGCTGATACCTTCTGAAGCTGTGGAGATTCAAGATGAAGAAGAGAAATTT
ATGGACGTGGAAGAAGTTACTGAAGATGGGATTGATGGAGCTAAGGAAGAAGCTCTTCATCAAGAAGAAGAGAGGTTCATAGATGTGGAACAAGTTAGTG
AAGATGACCACGATGGAAAGGCAGATGCCAGGGAAGAAGAAGTTACAACACCCCAGAATGGGAAATCCATGGTTGACTTGGGAACTATCGATGCAGCCAT
ACTTGCTTCAGCTGCTGGATTGCTGGTGCTGCTTACGATGGCGATGAGGAGGAAGAGGCTGAATAGTGCTTCCGATGCCTTGGTTCGGCCTCCTCCACGA
GCTCTGAGAAAAAGCATCTCAACTGTTGAAGTGGAGAAGAGTGAAGCAGCTGTTGTTCAGGAACAGGCTGAGAGTTCTTGTTCAACAATGGCTAGAGGTG
GCAAGAAAGGAACCAGCTCCATCGACAACCACAAGAATGAGCAGCTAAATGCAGAAGAGGCAAGTCGAAGCGATTCTCCAGTTGTTTTCCGACAGGCTGA
GAGTTATTGTTCAACAACGACAAGTGGCGAGAAAGGCACGACGAGCTCCTCCTCCTCCATCATCAAGAGGAGGAAGAAGAGGCAGGAGGAAATTGGAGAT
GCAGCTACTACTACTCCATTGAGGAGATCAACTAGAATAGCAGCCAGCCGCGGGATTCTTTCCCCTTGA
AA sequence
>Lus10037590 pacid=23167309 polypeptide=Lus10037590 locus=Lus10037590.g ID=Lus10037590.BGIv1.0 annot-version=v1.0
MSDPNQPSPAKKKLRPPSLKADGDENLSSVKKSPMKRFMSPTISRAAKVNPVPRTKIPAAERNESPAKLASPIASGFNLNYDGFRDENEKERNNNDGDNN
NLITDGSSPIPSSNYLSVSRSDGDESLSSVKKSPMKHFLSPTANQLSRTKILAERNESPSVKFVPPPPPPPPPRASSFKLNNGGFRNENDKEWNNNTNID
DNLITGDSLPMIPYNPASNYLSPRPKFLRYNPQRRSQILQRRVELEEEDVLDLEQDTTDTESDISPGNAAAPPLSPAKDDEVDGAIEEESGEDEFEEDDE
GSSVFGWVFQFLLLMMVLIASTWYITSMNNHPVEADYQEIHSCHPRVGFGRKIEVNGSCLLVGEGIVLRQQQPVAAPSFLVDVEQKGDGEEEEATEEVSE
GGMLVVELLQPSEDMEIQEEEENFIDITEDETNEAPYTEVLHPAAMEVLEEERLMEVEQRGEEEEEAAMEEVSEEGGIVLVVDELIPSEAVEIQDEEEKF
MDVEEVTEDGIDGAKEEALHQEEERFIDVEQVSEDDHDGKADAREEEVTTPQNGKSMVDLGTIDAAILASAAGLLVLLTMAMRRKRLNSASDALVRPPPR
ALRKSISTVEVEKSEAAVVQEQAESSCSTMARGGKKGTSSIDNHKNEQLNAEEASRSDSPVVFRQAESYCSTTTSGEKGTTSSSSSIIKRRKKRQEEIGD
AATTTPLRRSTRIAASRGILSP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10037590
[exp]
0 1
AT5G06150 CYC1BAT, CYCB1;... cyclin B 1;2, Cyclin family pr... Lus10003800
[exp]
1.0 0.9831
AT1G16630 unknown protein Lus10006845
[exp]
1.4 0.9812
AT1G77720 PPK1 putative protein kinase 1 (.1) Lus10028085
[exp]
2.2 0.9782
AT2G44190 EMB3116, EDE1, ... QWRF domain containing 5, EMBR... Lus10038729
[exp]
2.4 0.9795
AT4G33400 Vacuolar import/degradation, V... Lus10042656
[exp]
2.8 0.9788
AT4G33400 Vacuolar import/degradation, V... Lus10021729
[exp]
3.5 0.9764
AT2G19520 ATMSI4, ACG1, N... MULTICOPY SUPPRESSOR OF IRA1 4... Lus10027632
[exp]
4.4 0.9623
AT1G72250 Di-glucose binding protein wit... Lus10013714
[exp]
4.9 0.9724
AT3G42170 BED zinc finger ;hAT family di... Lus10032337
[exp]
5.1 0.9549
AT5G66230 Chalcone-flavanone isomerase f... Lus10025961
[exp]
5.2 0.9713

Lus10037590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.