Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51965 792 / 0 ABO5 ABA Overly-Sensitive 5 (.1) AT3G04760 209 / 4e-59 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63130 207 / 2e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 210 / 3e-57 PGR3 proton gradient regulation 3 (.1) AT5G65560 206 / 2e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 206 / 2e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63400 199 / 1e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 201 / 4e-55 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 198 / 6e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G31840 201 / 8e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006850 [exp] 1288 / 0 AT1G51965 782 / 0.0 ABA Overly-Sensitive 5 (.1) Lus10014660 [exp] 202 / 1e-56 AT3G04760 522 / 3e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10043417 [exp] 204 / 1e-55 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 199 / 3e-54 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 198 / 5e-54 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 197 / 8e-54 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 199 / 1e-53 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10000554 [exp] 192 / 5e-53 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10012068 [exp] 193 / 9e-52 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G105000 [exp] 936 / 0 AT1G51965 855 / 0.0 ABA Overly-Sensitive 5 (.1) Potri.006G264800 [exp] 217 / 1e-59 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.005G050400 [exp] 207 / 2e-58 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G047000 [exp] 206 / 3e-58 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.015G036400 [exp] 210 / 5e-58 AT1G31840 696 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G046000 [exp] 207 / 8e-58 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G124900 [exp] 209 / 2e-57 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G019300 [exp] 204 / 2e-57 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G034200 [exp] 202 / 2e-56 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 202 / 3e-56 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037592 pacid=23167063 polypeptide=Lus10037592 locus=Lus10037592.g ID=Lus10037592.BGIv1.0 annot-version=v1.0 ATGGCAATCGGAAGGGGTAGTTACCGGACTTTCTGTAGCAAGTTTAGGGAAGTTGATAGCCAAGTCGATGCCTTTCGATGTTATTCTACAAACTACACGG CCAAAGTGACCTCAGCATCTCCAACAGGCCGAGTTCTCTCAGCTGAGGTCTCAGCTCCGTACACTCTTGATCCACGAGGCTATGCTCTCCCTCGACGCCA GCTCGTTTGTAAAGTCACTCAGCTCCTTCGCCACTCCGATGATGGCCAATCATCCTACAAACCGAAGCTCAACCCGTTGCTCCAACTCGAGGATTACTTC GCCTCACATGATTCCATCACCCTCACATCCGAGGAAGTATGCGAGATTATGAAATCCATAAACTCGCCTTCACTCGCCATCAAGTTCTTCCACTTCTGCC CCAAGCTCTCCCCTAAATTCAGGCACAACTGCTACACCTACACCCGGCTGATCCTCATCCTTTCAAAGTCGAATCTATGTAACAAGGTGGATCTTGTTAG GGAAATGGTTTCTGAGATGGAGAAGAATGGGATTCGCGGGTCGATCTCTACTGTGAATATTTTGATAGGGTGTTTTGGGGAAGGACGGGGGGATCTTGAG AGCCGTATGGAGCTGGTGAAGAAATGGGGGTTGAAGATGACTGCCTATACTTACAAGTGTTTAGTTCAAGCGTATCTTAGGTCGTATGATACCGCTAAAG GGTTGAAGGTTTACGAGAAGATGAAGAGTGAAGGGTTTAAGCTTGATGTTTTTGCCTACAATATGCTCTTGAATGCTTTAACCAAAGATAACATGGTTAA CGAGGCTTGCTTGGTTTTCAACGACATGAAGAAGAACCACTGCATGCCAGATGAGTATACTTACACAATCATGATCAAACTGTCCGGGAAGACCGGTAAA CAACACGAAGCATTGGCTTTCTTTGAGGAAATGTTAACCAACGGCTATTCTCCAAACATAATCGCTTACAATACGATGCTCCTGGCGCTCACCAACAGTA GAATGGTCGACAAGGCGATCCTCCTCTTCTCTAAGATGGTGGAGAAAGGTTGTCGTCCGAACGAATACACGTATCATCTAGTCCTGAACTTGCTTGCAGC AGAAGGAAAGCTTCACAAGCTAGATGAGCTTATCGAGCTGTCGAAGAAATACATGACGAGATCAATTTACGCGTATCTTGTGAGGACGCTAAGTAAACTA GGGCATGCGAGTGAGGCTCACCGGCTATTTTGCAAACTGTGGAGTTTCCATGATAAAGGAGATAAAAACGCCTGCGTTTCAATGCTGGAGAGTCTGTGTA GTGCCGGTAAGACAACCGAGGCGATTGACTTGCTCAGCAAGCTTCACGAGAAAGAAGTGGTTGCCGATACTGCAATGTACAACGTAGTTCTTGCCGCTCT TGGAAAATCGAAGGAAGTATCTCACCTTCATGATCTGTATGAAAGCATGCGGAAAGATGGACCATTACCGGACACTTTCACGTACAACATTCTGATCTCA AGCTTTGGTAGGGTGGGGAGAGTTGACGATGCTGTTCGAATATTCGACGAGCTCGAGAGCAGTGAATGCATTCCGGATATAATCTCGTACAACTCGTTGA TCAACTGTCTGGGAAAGAACGGTGATGTTGATGCAGCTCACATGAAGTTTCGAGAAATGCGGGAGAAGGGACTTGATCCGGATGTTGTGACGTATAGCAC GCTTATCGAGTGTTTTGGGAAGACGGAGAAAGTCGAGATGGCGTGCAGACTGTTCGATGAGATGCTTGCAGAAGGCTGCTACCCGAATATTGTGACGTAT AACATTCTACTTGACTGTCTTGAGAGGAGTGGCAGGACTGCTGAAGCTGTTGATCTATATGCTAAGCTTAAACTTAATGGGTTAACGCCCGATTCGATCA CTTATGCGGTTCTCGAACGGTTGCAGAGTGGTTCAGGCAGGAAGTTTAGAGTCCGTAGGCAGCACCCAATCACTGGCTGGGTTGTTAGCCCATTATGA
AA sequence Show only first row Show all	>Lus10037592 pacid=23167063 polypeptide=Lus10037592 locus=Lus10037592.g ID=Lus10037592.BGIv1.0 annot-version=v1.0 MAIGRGSYRTFCSKFREVDSQVDAFRCYSTNYTAKVTSASPTGRVLSAEVSAPYTLDPRGYALPRRQLVCKVTQLLRHSDDGQSSYKPKLNPLLQLEDYF ASHDSITLTSEEVCEIMKSINSPSLAIKFFHFCPKLSPKFRHNCYTYTRLILILSKSNLCNKVDLVREMVSEMEKNGIRGSISTVNILIGCFGEGRGDLE SRMELVKKWGLKMTAYTYKCLVQAYLRSYDTAKGLKVYEKMKSEGFKLDVFAYNMLLNALTKDNMVNEACLVFNDMKKNHCMPDEYTYTIMIKLSGKTGK QHEALAFFEEMLTNGYSPNIIAYNTMLLALTNSRMVDKAILLFSKMVEKGCRPNEYTYHLVLNLLAAEGKLHKLDELIELSKKYMTRSIYAYLVRTLSKL GHASEAHRLFCKLWSFHDKGDKNACVSMLESLCSAGKTTEAIDLLSKLHEKEVVADTAMYNVVLAALGKSKEVSHLHDLYESMRKDGPLPDTFTYNILIS SFGRVGRVDDAVRIFDELESSECIPDIISYNSLINCLGKNGDVDAAHMKFREMREKGLDPDVVTYSTLIECFGKTEKVEMACRLFDEMLAEGCYPNIVTY NILLDCLERSGRTAEAVDLYAKLKLNGLTPDSITYAVLERLQSGSGRKFRVRRQHPITGWVVSPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51965		ABO5	ABA Overly-Sensitive 5 (.1)		Lus10037592 [exp]	0	1
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10006376 [exp]	3.2	0.7934
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	9.1	0.8043
AT5G47400			unknown protein		Lus10004740 [exp]	17.7	0.7769
AT1G76400			Ribophorin I (.1)		Lus10016038 [exp]	19.3	0.7894
AT1G35660			unknown protein		Lus10028705 [exp]	22.4	0.7645
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10036594 [exp]	22.4	0.7736
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10012331 [exp]	23.2	0.7878
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10027835 [exp]	23.8	0.7717
AT1G76400			Ribophorin I (.1)		Lus10025159 [exp]	24.9	0.7776
AT1G24265			Protein of unknown function (D...		Lus10003127 [exp]	25.9	0.7748

Compare expression of checked genes

Lus10037592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.