Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33270 703 / 0 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 686 / 0 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT5G26900 592 / 0 AtCDC20.4 cell division cycle 20.4, Transducin family protein / WD-40 repeat family protein (.1) AT5G27080 592 / 0 AtCDC20.3 cell division cycle 20.3, Transducin family protein / WD-40 repeat family protein (.1) AT5G27570 579 / 0 AtCDC20.5 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1) AT5G27945 463 / 7e-162 Transducin/WD40 repeat-like superfamily protein (.1) AT4G22910 332 / 1e-109 CCS52A1, FZR2 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) AT5G13840 332 / 1e-109 FZR3 FIZZY-related 3 (.1.2) AT4G11920 321 / 1e-105 FZR1, CCS52A2 FIZZY-RELATED 1, cell cycle switch protein 52 A2 (.1) AT1G11160 82 / 2e-16 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006853 [exp] 856 / 0 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006851 [exp] 851 / 0 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10034687 [exp] 675 / 0 AT4G33270 620 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042748 [exp] 640 / 0 AT4G33270 592 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042765 [exp] 578 / 0 AT4G33270 542 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10037595 [exp] 434 / 1e-153 AT4G33270 402 / 2e-141 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10040282 [exp] 340 / 2e-109 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2) Lus10043009 [exp] 328 / 2e-108 AT4G33270 344 / 1e-114 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10024482 [exp] 319 / 4e-104 AT4G22910 733 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G118400 [exp] 720 / 0 AT4G33270 771 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.013G048900 [exp] 714 / 0 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G021800 [exp] 711 / 0 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G068700 [exp] 611 / 0 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.015G110300 [exp] 352 / 1e-117 AT4G33270 363 / 5e-122 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.010G202100 [exp] 328 / 5e-108 AT5G13840 707 / 0.0 FIZZY-related 3 (.1.2) Potri.001G112700 [exp] 322 / 2e-105 AT4G22910 705 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.008G057500 [exp] 318 / 2e-104 AT5G13840 705 / 0.0 FIZZY-related 3 (.1.2) Potri.003G119500 [exp] 317 / 7e-104 AT4G22910 702 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.008G002300 [exp] 84 / 3e-17 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10037593 pacid=23167230 polypeptide=Lus10037593 locus=Lus10037593.g ID=Lus10037593.BGIv1.0 annot-version=v1.0 ATGAACACCAGATTCCCACTCCAGAGAAGAAGTTCCAAGGATAACCCGGACAGGTTTATTCCGAATCGGTCGGCGATGGACATGGATTACGCCCACTACA TGGCCACGGAAGGATGGAAAGAACCGGAGAATCCAGTCCCAAGTTCCCCTTCAAGCGAGGCTTACAAGAGACTGCTGGCGGAGACTATGAACTTGAATCG GACAAGGATTTTGGCGTTCAAGAACAAGCCTCCTACTCCAGTTGAATTGATCCCGCATTTCCACACTTCTTCTTCAGATTCATCTCTTCCTCACCAGGCG AAACCAGCCAAGCCTCGCAGACACATTCCTCAGACTTCAGAGAGAACATTGGATGCTCCCGACCTTGTGGATGATTTTTACTTGAACTTACTCGATTGGG GAAGCAGCAATGTTCTTGCAATAGGATTGGGAAGTACTGTTTATCTCTGGGATGCTTCAAACGGCTCTACTTCTGAGCTTGTCTCTGTTGATGAAGAACT CGGCCCTGTGACCAGCGTTAACTGGGCTCCCGATGGCCAGAATATCGCTATTGGTCTGAACAATTCTGAAGTCCAACTGTGGGATTCTACTTCTAACAAA CTGTTAAGAACGTTGAGAGGCGGCCACAGATGCAGAGTCGGATCATTGGCATGGAACAACCACATCTTAACCACTGGAGGAATGGATGGAAGGATTATAA ACAACGATGTCCGAATCAGAAAACACATAGTTGAAACATACAGAGGCCACACGCAAGAAGTCTGTGGACTGAAATGGTCAGCTTCAGGTCAACAACTAGC AAGCGGAGGAAACGACAATCGCGTCCACATATGGGACAGATCCATGGCTTCTTCCAACTCAGCAACTCAGTATCTTCACCGACTCGAAGATCATACCTCG GCGGTAAAGGCTCTAGCTTGGTGTCCGTTCCAAGGGAACTTGCTAGCCACAGGTGGCGGTGGAGGAGACAGAACTATCAAGTTCTGGAACACTCATACTG GCGCGTGCTTGAACTCGGTGGATACTGGATCCCAGGTGTGTGCATTGCTGTGGAACAAGAATGAGAGGGAGCTTCTGAGCTCTCATGGGTTTACGCAGAA TCAGCTTACCTTGTGGAAGTATCCGTCCATGGTGAAGACTGCTGAGCTTACTGGCCACACCTCGAGGGTTTTGTTCATGGCTCAGAGTCCTGATGGGTGC ACTGTGGCGTCAGCAGCAGGGGATGAAACTCTGAGGTTCTGGAACGTGTTTGGGGATCCTGAAGCTGCTAAGAAATCTGCTCCTAAAACCAATCCCGAGC CGTTCGCCTGGGCCAATCGTATCCGCTGA
AA sequence Show only first row Show all	>Lus10037593 pacid=23167230 polypeptide=Lus10037593 locus=Lus10037593.g ID=Lus10037593.BGIv1.0 annot-version=v1.0 MNTRFPLQRRSSKDNPDRFIPNRSAMDMDYAHYMATEGWKEPENPVPSSPSSEAYKRLLAETMNLNRTRILAFKNKPPTPVELIPHFHTSSSDSSLPHQA KPAKPRRHIPQTSERTLDAPDLVDDFYLNLLDWGSSNVLAIGLGSTVYLWDASNGSTSELVSVDEELGPVTSVNWAPDGQNIAIGLNNSEVQLWDSTSNK LLRTLRGGHRCRVGSLAWNNHILTTGGMDGRIINNDVRIRKHIVETYRGHTQEVCGLKWSASGQQLASGGNDNRVHIWDRSMASSNSATQYLHRLEDHTS AVKALAWCPFQGNLLATGGGGGDRTIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKTAELTGHTSRVLFMAQSPDGC TVASAAGDETLRFWNVFGDPEAAKKSAPKTNPEPFAWANRIR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10037593 [exp]	0	1
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10029700 [exp]	1.7	0.9764
AT5G66230			Chalcone-flavanone isomerase f...		Lus10025961 [exp]	2.8	0.9713
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10003800 [exp]	3.0	0.9741
AT1G03470			Kinase interacting (KIP1-like)...		Lus10040904 [exp]	3.5	0.9635
AT5G27550			P-loop containing nucleoside t...		Lus10004487 [exp]	3.5	0.9750
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10010519 [exp]	5.5	0.9668
AT5G26910			unknown protein		Lus10037725 [exp]	6.5	0.9656
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10037691 [exp]	8.0	0.9650
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10015684 [exp]	8.7	0.9691
AT4G14330			P-loop containing nucleoside t...		Lus10011804 [exp]	10.0	0.9639

Compare expression of checked genes

Lus10037593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.