Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03120 512 / 0 ATSPP signal peptide peptidase (.1) AT4G33410 115 / 4e-29 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) AT1G01650 94 / 4e-21 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT1G63690 94 / 5e-21 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT2G43070 94 / 7e-21 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G05820 89 / 2e-19 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006852 [exp] 640 / 0 AT2G03120 537 / 0.0 signal peptide peptidase (.1) Lus10039239 [exp] 112 / 6e-28 AT4G33410 631 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Lus10027484 [exp] 103 / 3e-25 AT4G33410 512 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Lus10001154 [exp] 102 / 6e-24 AT1G05820 563 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) Lus10017796 [exp] 99 / 1e-22 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10018834 [exp] 99 / 1e-22 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10024653 [exp] 98 / 2e-22 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10031104 [exp] 94 / 6e-21 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10032285 [exp] 94 / 1e-20 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276700 [exp] 545 / 0 AT2G03120 550 / 0.0 signal peptide peptidase (.1) Potri.009G071600 [exp] 535 / 0 AT2G03120 542 / 0.0 signal peptide peptidase (.1) Potri.012G142400 [exp] 115 / 4e-29 AT4G33410 633 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.015G145600 [exp] 114 / 2e-28 AT4G33410 614 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.002G232200 [exp] 100 / 6e-23 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 99 / 8e-23 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.002G160500 [exp] 96 / 2e-21 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.001G103100 [exp] 95 / 3e-21 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.003G128500 [exp] 94 / 6e-21 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.014G085300 [exp] 94 / 6e-21 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [flax] [poplar] Peptidase_AD PF04258 [flax] [poplar] Peptidase_A22B Signal peptide peptidase
Representative CDS sequence Show only first row Show all	>Lus10037594 pacid=23167324 polypeptide=Lus10037594 locus=Lus10037594.g ID=Lus10037594.BGIv1.0 annot-version=v1.0 ATGATGAATGTAGAGCGTTTTGCTAACGTTGCCTTAGCAGGTTTAACGTTAGCGCCCCTGGTGGTGAAAGTAGACCCGAATGTAAATGTCATATTGACTG CATGCCTTGCTGTATTTGTTGGTTGCTACAGATCTGTTAAGCCAACTCCATTTTCAGAAACGATGTCCAATGAGCATGCTATGCGCTTCCCTTTTGTTGG CAGTGCTATGCTGTTATCTCTATTCTTACTCTTCAAGTTTGTGCCCAAGCACCTGGTTAATTCAGTGTTGACTCTTTACTTCTTTGTGCTTGGAATCGTT GCACTTTCTGCAACATTGTTACCAGCTATCAAACCATACTTGCCGAAGGAATGGAATGACGGAGTGATCTCATTGCGTGCTCCGTATTTTCGCTCTCTGG ACGTCGAGTTCACTAGGTCTCAACTAGTGGCTGCAGTTCCTGGAGCATTCTTCTGTGCATGGTATGCTTGGAAAAAGCACTGGCTGGCAAACAACATTCT GGGGTTGGCTTTCTGTATTCAGGGGATTGAAATGCTTTCCCTTGGTTCATTTAAGACTGGTGCCATCCTCTTGTCTGGGCTTTTTGTGTATGATATTTTC TGGGTTTTCTTCACTCCTGTGATGGTTAGTGTGGCAAAATCGTTTGATGCTCCAATAAAGCTCTTATTTCCAACAGCTGATGCCACCAGGCCTTTTTCCA TGCTGGGACTCGGTGATATCGTAATTCCTGGAATCTTTGTAGCTCTGGCATTGAGATTTGATGTCTCAAGGGGGAAAGGCAATCAGTACTTCAAGAGTGC GTTTGTTGGATACGCTGTAGGAATGGTTCTTACCATCATCGTGATGAACTGGTTCAAAGCTGCTCAGCCTGCACTCCTCTACATTGTACCCTCCGTCATC GGATTCCTAGCCGCTCACGTCCTCTACAACGGCGATGTCAAACCGTTGCTGGAATTCGACGAGGCGAAAATGGCAGAGGCTGCTGCCGAGGAAAGTAGCA GCAAATCGGAGGAAGAGAGCAAGAAAGAAGAGTGA
AA sequence Show only first row Show all	>Lus10037594 pacid=23167324 polypeptide=Lus10037594 locus=Lus10037594.g ID=Lus10037594.BGIv1.0 annot-version=v1.0 MMNVERFANVALAGLTLAPLVVKVDPNVNVILTACLAVFVGCYRSVKPTPFSETMSNEHAMRFPFVGSAMLLSLFLLFKFVPKHLVNSVLTLYFFVLGIV ALSATLLPAIKPYLPKEWNDGVISLRAPYFRSLDVEFTRSQLVAAVPGAFFCAWYAWKKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLSGLFVYDIF WVFFTPVMVSVAKSFDAPIKLLFPTADATRPFSMLGLGDIVIPGIFVALALRFDVSRGKGNQYFKSAFVGYAVGMVLTIIVMNWFKAAQPALLYIVPSVI GFLAAHVLYNGDVKPLLEFDEAKMAEAAAEESSSKSEEESKKEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03120		ATSPP	signal peptide peptidase (.1)		Lus10037594 [exp]	0	1
AT2G03120		ATSPP	signal peptide peptidase (.1)		Lus10006852 [exp]	4.5	0.7525
AT5G11150		ATVAMP713	vesicle-associated membrane pr...		Lus10001492 [exp]	16.1	0.7650
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10036549 [exp]	16.2	0.7586
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10036657 [exp]	22.8	0.7404
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	46.0	0.7155
AT5G51740			Peptidase family M48 family pr...		Lus10015019 [exp]	51.9	0.7001
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10021742 [exp]	55.0	0.7087
AT5G52880			F-box family protein (.1)		Lus10039308 [exp]	61.0	0.7177
AT4G30240			Syntaxin/t-SNARE family protei...		Lus10017038 [exp]	71.8	0.6951
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	74.3	0.6932

Compare expression of checked genes

Lus10037594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.