Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17420 241 / 2e-80 NTR2, ATNTRA, NTRA NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) AT4G35460 236 / 1e-78 ATNTRB, TRB1, NTR1 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 1, NADPH-dependent thioredoxin reductase B (.1) AT2G41680 139 / 7e-40 NTRC NADPH-dependent thioredoxin reductase C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006853 [exp] 285 / 2e-92 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10038256 [exp] 256 / 7e-88 AT2G17420 442 / 1e-157 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10025845 [exp] 255 / 5e-87 AT2G17420 437 / 7e-155 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10018051 [exp] 129 / 3e-36 AT2G41680 845 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Lus10042048 [exp] 129 / 8e-36 AT2G41680 840 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Lus10019550 [exp] 99 / 2e-27 AT2G17420 202 / 5e-65 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G456800 [exp] 254 / 2e-85 AT2G17420 582 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Potri.011G145100 [exp] 251 / 1e-84 AT2G17420 568 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Potri.006G049100 [exp] 130 / 1e-36 AT2G41680 785 / 0.0 NADPH-dependent thioredoxin reductase C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10037596 pacid=23167094 polypeptide=Lus10037596 locus=Lus10037596.g ID=Lus10037596.BGIv1.0 annot-version=v1.0 ATGGAGGAGGCGAATTTCTTGACGAAGTACGGGAGCAAGGTTTACATCATTCATCGGAGGGACACCTTTAGGGCATCGAAGATTATGCAGAACAGGGCGA TGAAGAACCCTAAGATTGAGGTGATTTGGAATTCGGTAACGGAGGAGGCCTATGGTGAGAAGTCGCTAAAAGGATTGAAGGTGAAGAACATTGTTAGCGG TGAGGTTTCTGATTTGACAGTTTCCGGGTTGTTCTTCGCCATTGGACATGAGCCTGCTACTAAGTTCTTGGATGGGCAGCTTGAGGTTCACTCTGATGGA TACGTTGTGACGAAGCCTGGAACTACGCAGACTAGTGTTAGAGGTGTTTTTGCTGCTGGTGATGTTCAGGATAAGAAGTATAGGCAGGCCATTACTGCTG CTGGCACTGGTTAG
AA sequence Show only first row Show all	>Lus10037596 pacid=23167094 polypeptide=Lus10037596 locus=Lus10037596.g ID=Lus10037596.BGIv1.0 annot-version=v1.0 MEEANFLTKYGSKVYIIHRRDTFRASKIMQNRAMKNPKIEVIWNSVTEEAYGEKSLKGLKVKNIVSGEVSDLTVSGLFFAIGHEPATKFLDGQLEVHSDG YVVTKPGTTQTSVRGVFAAGDVQDKKYRQAITAAGTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10037596 [exp]	0	1
AT1G18480		AtSLP2	Shewenella-like protein phosph...		Lus10014985 [exp]	1.0	0.8787
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10009859 [exp]	2.8	0.8617
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10028824 [exp]	2.8	0.8521
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10021304 [exp]	3.5	0.8336
AT3G05500			Rubber elongation factor prote...		Lus10015171 [exp]	3.9	0.8486
AT1G07310			Calcium-dependent lipid-bindin...		Lus10005867 [exp]	4.2	0.8597
AT5G03370			acylphosphatase family (.1)		Lus10026533 [exp]	4.2	0.8467
AT3G62580			Late embryogenesis abundant pr...		Lus10025037 [exp]	8.0	0.8317
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10006071 [exp]	8.5	0.8182
AT1G19140			unknown protein		Lus10027662 [exp]	8.8	0.7971

Compare expression of checked genes

Lus10037596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.