Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16370 468 / 2e-166 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G22810 401 / 4e-140 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03810 383 / 1e-132 GDSL-like Lipase/Acylhydrolase family protein (.1) AT5G03820 376 / 5e-130 GDSL-like Lipase/Acylhydrolase family protein (.1) AT3G53100 343 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 262 / 2e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 253 / 1e-81 SGNH hydrolase-type esterase superfamily protein (.1) AT5G45960 252 / 5e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G63170 244 / 1e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14820 238 / 4e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006856 [exp] 649 / 0 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006855 [exp] 543 / 0 AT3G16370 445 / 4e-157 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008639 [exp] 362 / 2e-124 AT5G03810 463 / 2e-164 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10008635 [exp] 362 / 2e-124 AT5G03810 460 / 3e-163 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10040791 [exp] 355 / 7e-122 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035590 [exp] 340 / 7e-116 AT5G03810 427 / 1e-150 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035585 [exp] 324 / 4e-110 AT5G03810 419 / 1e-147 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10034540 [exp] 257 / 2e-83 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 257 / 4e-83 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G191400 [exp] 504 / 0 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 404 / 3e-141 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191600 [exp] 405 / 5e-141 AT3G16370 410 / 1e-142 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 393 / 9e-137 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.006G144400 [exp] 370 / 3e-128 AT3G16370 375 / 2e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 266 / 8e-87 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 262 / 4e-85 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 251 / 5e-81 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 247 / 2e-79 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 246 / 4e-79 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10037598 pacid=23167046 polypeptide=Lus10037598 locus=Lus10037598.g ID=Lus10037598.BGIv1.0 annot-version=v1.0 ATGATCACCTCATTGCTCTGCTTCTTCTTCTTCTGCAGCTCTCTGTTTCTGGGTAATTTTGGCCATGCACAGGAGAGCACAACGCTTGTTCCTGGGTTGA TATTATTCGGCGACTCGGCCGTTGATGTTGGCAACAATGACTACCTCCCAACTCTGTTCAAGGCCAATTACCCTCCTTATGGCAGAGACTTTGTCACTCA CCAGCCTACTGGCAGGTTCTGCAATGGCAAATTGGCTACTGATATCACTGGTGAAACACTGGGATTCAAGACATACCCGCCAGCATATCTGAGCCCAGAT GCAGCAGGGAACAACCTCCTAACTGGAGCCAACTTCGCATCGGCTGCATCCGGGTTCGACGAGAAATCCGCTTCCCTCAATCATGCAATCACTCTGCCAC AGCAGCTGGAGCTGTTCAAGGAGTACAAAGGGAAGCTAGCCAAAGTTGCTGGTGACAAAAAATCGGCCACAATCATCAGCGACTCGCTATATCTACTGAG CGCCGGAAGCAGTGATTTCCTGCAGAATTACTATGTTAACCCTCTGCTCAACAAGGTCTACACCCCCGACCAGTACGGCTCCTTGCTCATCTCCTCTTTC AACTCCTTCGTGAAGGGACTATACAACCTGGGAGGGAGAAGGCTCGGCGTGACATCGCTCCCTCCACTCGGGTGCCTACCGGCGGCCAGGACAATATTCG GCTACCACGAGCAAGGGTGCGTGTCAAGAATCAACACGGACGCCCAACAGTTCAACAAGAAGGTCACCTCTGCAGCGGCATCGCTGCAGAAACAGCTACC GGGGATGAAGATCGTCGTGCTTGACATCTTCAAGCCCCTCTACGACATCGTCAAGAAGCCCTCCGACTTCGGCTTCGCTGAGGCCCGGAGAGGGTGCTGC GGAACCGGGACAGTGGAGACCACGGTGCTTCTGTGTAACCCGAAGTCGATCGGGACGTGCCCGAACGCGACGCAGTATGTGTTCTGGGACAGTGTCCATC CTTCTGAGGCTGCTAATCAAGTCCTCGCTGATGCTCTCCTCGTACAGGGGATTTCCCTCATTGGATGA
AA sequence Show only first row Show all	>Lus10037598 pacid=23167046 polypeptide=Lus10037598 locus=Lus10037598.g ID=Lus10037598.BGIv1.0 annot-version=v1.0 MITSLLCFFFFCSSLFLGNFGHAQESTTLVPGLILFGDSAVDVGNNDYLPTLFKANYPPYGRDFVTHQPTGRFCNGKLATDITGETLGFKTYPPAYLSPD AAGNNLLTGANFASAASGFDEKSASLNHAITLPQQLELFKEYKGKLAKVAGDKKSATIISDSLYLLSAGSSDFLQNYYVNPLLNKVYTPDQYGSLLISSF NSFVKGLYNLGGRRLGVTSLPPLGCLPAARTIFGYHEQGCVSRINTDAQQFNKKVTSAAASLQKQLPGMKIVVLDIFKPLYDIVKKPSDFGFAEARRGCC GTGTVETTVLLCNPKSIGTCPNATQYVFWDSVHPSEAANQVLADALLVQGISLIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10037598 [exp]	0	1
AT1G09310			Protein of unknown function, D...		Lus10039866 [exp]	1.0	0.9659
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10041806 [exp]	1.4	0.9638
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10011358 [exp]	1.7	0.9530
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10004321 [exp]	2.6	0.8976
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006856 [exp]	4.0	0.9251
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10030209 [exp]	4.5	0.9186
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10034763 [exp]	4.9	0.8490
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015999 [exp]	5.5	0.9074
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10008616 [exp]	7.2	0.8789
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10015499 [exp]	8.9	0.8947

Compare expression of checked genes

Lus10037598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.