Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21320 78 / 3e-15 unknown protein AT2G25930 59 / 4e-09 PYK20, ELF3 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006857 [exp] 611 / 0 AT2G25930 110 / 8e-26 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1) Lus10007459 [exp] 82 / 4e-16 AT2G25930 218 / 1e-59 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1) Lus10005501 [exp] 76 / 2e-14 AT2G25930 304 / 5e-93 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G045000 [exp] 72 / 3e-13 AT3G21320 202 / 6e-58 unknown protein Potri.006G233800 [exp] 60 / 2e-09 AT2G25930 363 / 1e-115 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037599 pacid=23167383 polypeptide=Lus10037599 locus=Lus10037599.g ID=Lus10037599.BGIv1.0 annot-version=v1.0 ATGGCTCTGTGCGATGAGCAGCTTAGCACAATCCCTTCTCCATACGGATTCCCTCCAATGTCCTCAATCCAAGGCTACGACCGTCACGAGAAGAACAATA GACAAATGAAACCGGCAGAGCCCCGGGCATTTGCTAACTGCACTACTTCATTCCAGCCGCCTTGGGTCCCAAGCTACAGAAACTTGGACCTTAAACAACA AGCAAGAAGGAACCAACCTGACCACTATTTTTCGGTCAGATCGATTAGGACTCCTGATTCATGTAATGTCAGGAAGCAAACAGATCAGTTATGTACAGGC AGTAGCTCAGACATCAATGTAGATTGCTTGGAACACAAGGCAAGACTTTTCGAAGAATCCTCGCTAGCTGAAGCATCGGGGTCGAACTCTCTGGCTTGCT CTTCTTCTGTTATTATAACTCCTGATCATGTCATGAATGTCATGGGTGAGAAGCAATTCTGGCTGACAAGAAGAGCTATGATCGACAAAACTCCTACCCC ATTGGTTCTCTGTTTGCAGCCAACAAAGGATGTTTGCTGTGCAAGTTTTCGAATTGCATCGTCTCGTCCAAGTAAGTTTGGAAAGTCCTTTATCGAACTA CATTCATTCAATCGTATTCGATCCAGCAAGTTGCTTATTAGTTTCATTGTATGTGTGAGCCAGGTACAAAGATTAACGGCTCGCTCACCGGATCTTCTGC TCGACGACAAGGTAGATTTCTATACACCCTCGATCAAACCGGTAAAGAAGCTGCAACATTCAACCGGAATCGAGGTAGGAGAGCATTCCCCGCGAGCAGC AACACCGGATCACAATGGACCGCCACCAGGGACATTACAGGCGGGAAACCAGTGGCTGGTCCCCGTAATTTCCCCTTCTGAAGGGCTTGTTTACAAGCCC TACTCGGGGACATTATCAGCCAGTGGGTTCATGGCATTACCATTCTACGCAGAATGTGGCGCTGCCATGAATCCACCATACGGGATGGTGATGCTAGCAC CTGTCGCGAACTCACCACCACCCCATGATCACCGAAGCACCAGATTCGTGGCCCCGGGGTCAGTGTTGTCAAAGGAGGATGTTAGTAGTATACCTAGCCG AAGCTCTGCATCATCAAACATGTCGAGCACGGTGATGATGAAGGTTCAGTCTGGTGGTGGAAATAATGATGACAATGCAGTGCTCAGTCTTTTCCCTTTG GAGCCTACGAAGAATAATGTCGAGACGTGCGATGCAAGTAAGATGGATCGGATGAATCGAGACCAGCAACGTTTGATCAAAGTAATACCTCGCAACCCGA GATTGGCTACCGAATCTGCTGCTAAGATATTCAATTTGATACAGGAAGAGAGGAAGAGAAATTTCAATCTAACTCTTAGGATAGAAGAAAAGAAATAA
AA sequence Show only first row Show all	>Lus10037599 pacid=23167383 polypeptide=Lus10037599 locus=Lus10037599.g ID=Lus10037599.BGIv1.0 annot-version=v1.0 MALCDEQLSTIPSPYGFPPMSSIQGYDRHEKNNRQMKPAEPRAFANCTTSFQPPWVPSYRNLDLKQQARRNQPDHYFSVRSIRTPDSCNVRKQTDQLCTG SSSDINVDCLEHKARLFEESSLAEASGSNSLACSSSVIITPDHVMNVMGEKQFWLTRRAMIDKTPTPLVLCLQPTKDVCCASFRIASSRPSKFGKSFIEL HSFNRIRSSKLLISFIVCVSQVQRLTARSPDLLLDDKVDFYTPSIKPVKKLQHSTGIEVGEHSPRAATPDHNGPPPGTLQAGNQWLVPVISPSEGLVYKP YSGTLSASGFMALPFYAECGAAMNPPYGMVMLAPVANSPPPHDHRSTRFVAPGSVLSKEDVSSIPSRSSASSNMSSTVMMKVQSGGGNNDDNAVLSLFPL EPTKNNVETCDASKMDRMNRDQQRLIKVIPRNPRLATESAAKIFNLIQEERKRNFNLTLRIEEKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10037599 [exp]	0	1

Compare expression of checked genes

Lus10037599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.