Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51760 644 / 0 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT1G51780 582 / 0 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT5G56660 541 / 0 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT5G56650 526 / 0 ILL1 IAA-leucine resistant (ILR)-like 1 (.1) AT1G44350 415 / 2e-142 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1) AT3G02875 406 / 2e-139 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT5G54140 399 / 2e-136 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006864 [exp] 785 / 0 AT1G51760 586 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10009737 [exp] 528 / 0 AT1G51760 466 / 1e-164 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 508 / 2e-179 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030659 [exp] 507 / 5e-179 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10010715 [exp] 485 / 6e-170 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10029200 [exp] 471 / 1e-164 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10025668 [exp] 435 / 4e-150 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Lus10032963 [exp] 423 / 6e-146 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10022761 [exp] 417 / 2e-143 AT3G02875 489 / 3e-172 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G045200 [exp] 696 / 0 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.010G035900 [exp] 494 / 3e-173 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.005G178900 [exp] 486 / 7e-170 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.002G082400 [exp] 481 / 5e-168 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.016G074100 [exp] 439 / 2e-151 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.012G007400 [exp] 432 / 2e-149 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.006G207400 [exp] 431 / 7e-149 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207300 [exp] 426 / 3e-147 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.015G004000 [exp] 417 / 1e-143 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.001G143200 [exp] 42 / 0.0006 AT4G17830 744 / 0.0 Peptidase M20/M25/M40 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10037601 pacid=23167206 polypeptide=Lus10037601 locus=Lus10037601.g ID=Lus10037601.BGIv1.0 annot-version=v1.0 ATGAAATTTCTCAACAGGATTTCTCTGGTTCTACTCCTGCTCTCCCACTCGTTTCTGGGAATCAGTCTCTGCTCCTCATCGGGGGACTTCTCGAAGAGGT TTCTCAGTTTCGCGAAGGAAGACGGCTTTTTCGACTGGATGGTGGGTATAAGGAGGAAGATACATGAAAATCCTGAATTGGGTTATGAGGAATTCGAGAC CAGTAAGCTGATTAGAGCCGAGCTAGATAAACTGGGCGTCGAGTATAAGTACCCTCTAGCTGTTACTGGTATTGTTGGGTTCATCGGAACTGGAAAGGCT CCCTTTGTTGCCTTGCGAGCTGATATGGATGCTCTCGCTATGCAGGAAATGGTGGAATGGGAGCACAAGAGTAAGGTTCCTGGAAAGATGCATGCTTGTG GCCACGATGCTCATGTGGCAATGCTCCTCGGTGCAGCAAAGATCCTTCAAGAGCATCGAGACGAATTGAAGGGCACAGTAGTCCTCCTCTTTCAACCGGC GGAGGAAGGAGGAGGCGGCGCGAAGAAAATGATCGATGCTGGAGCCTTAGACAACGTGAATGCAATTTTCGGATTACACGTCGACACAAAGTTGCCCCTC GGCAAAGTGGCTTCGAGATCCGGCCCCATACTTGCAGGCAGTGGAATGTTCGAAGCTGTGATTGGAGGTAAAGGTGGCCACGCTGCCATCCCGCAGCATT CTATTGATCCGATCCTGGCTGCCTCCAACGTCGTTGTCAGCTTACAACATCTCGTTTCGCGCGAAGCAGATCCGCTAGACTCTCAGGTTGTTACAGTGGC AAAGTTCCAAGGTGGTGGTGCATTCAACGTCATACCAGATTCTGTTACAATCGGAGGAACCTTCCGAGCCTTTTCGAAAGAGAGCTTTAACCAACTCAAG CAGCGTATCAAGGAGGTGATCAAGGGCCAGGCAGCGGTGCAAAGGTGCACAGCGAGCATCAACTTCCTCGAACACGAGAAGCCAACCTTCCCTCCGACGG TGAACCACAAGGACCTCCACGAATACTTCAAGACCGTCGCCTCAGATATGCTAGGAGGTGCCAGCAAAGTTTCAGAGATGCAGCCTCTGATGGGATCTGA GGATTTCTCCTTCTACCAAGAAGCTGTTCCTGGCTACTTCTTCTTTGTCGGCATGCACGATGATGCCCGGGAGAAGCTCGAATCAGGGCACTCGCCATAC TTCAAAGTCAACGAAGAAGCGCTGCCCTACGGTGCTGCACTTCATGCTTCGCTCGCTGCCAGGTACCTCGTTGAATTCGAGCCGAAAAGTTGTAGGCAGG AGCCGAAGCAGAAGCATCACGATGAACTGTAG
AA sequence Show only first row Show all	>Lus10037601 pacid=23167206 polypeptide=Lus10037601 locus=Lus10037601.g ID=Lus10037601.BGIv1.0 annot-version=v1.0 MKFLNRISLVLLLLSHSFLGISLCSSSGDFSKRFLSFAKEDGFFDWMVGIRRKIHENPELGYEEFETSKLIRAELDKLGVEYKYPLAVTGIVGFIGTGKA PFVALRADMDALAMQEMVEWEHKSKVPGKMHACGHDAHVAMLLGAAKILQEHRDELKGTVVLLFQPAEEGGGGAKKMIDAGALDNVNAIFGLHVDTKLPL GKVASRSGPILAGSGMFEAVIGGKGGHAAIPQHSIDPILAASNVVVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDSVTIGGTFRAFSKESFNQLK QRIKEVIKGQAAVQRCTASINFLEHEKPTFPPTVNHKDLHEYFKTVASDMLGGASKVSEMQPLMGSEDFSFYQEAVPGYFFFVGMHDDAREKLESGHSPY FKVNEEALPYGAALHASLAARYLVEFEPKSCRQEPKQKHHDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037601 [exp]	0	1
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10006864 [exp]	1.0	0.9520
AT1G01490			Heavy metal transport/detoxifi...		Lus10007911 [exp]	2.0	0.9137
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	4.2	0.9039
AT5G40670			PQ-loop repeat family protein ...		Lus10014572 [exp]	4.7	0.9010
AT3G01690			alpha/beta-Hydrolases superfam...		Lus10014890 [exp]	6.5	0.8751
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10024192 [exp]	9.5	0.8978
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	9.8	0.9112
AT3G13840	GRAS		GRAS family transcription fact...		Lus10022097 [exp]	11.1	0.8698
AT5G47740			Adenine nucleotide alpha hydro...		Lus10002238 [exp]	12.1	0.8667
AT3G09760			RING/U-box superfamily protein...		Lus10019931 [exp]	17.5	0.8904

Compare expression of checked genes

Lus10037601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.