Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51760 292 / 2e-98 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT1G51780 282 / 2e-94 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT5G56660 258 / 4e-85 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT5G56650 257 / 7e-85 ILL1 IAA-leucine resistant (ILR)-like 1 (.1) AT1G44350 221 / 2e-70 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1) AT3G02875 208 / 1e-65 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT5G54140 207 / 3e-65 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006864 [exp] 358 / 1e-124 AT1G51760 586 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10037601 [exp] 358 / 2e-124 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10009737 [exp] 268 / 2e-90 AT1G51760 466 / 1e-164 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 251 / 3e-82 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030659 [exp] 249 / 1e-81 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10010715 [exp] 234 / 2e-75 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10029200 [exp] 222 / 8e-71 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10025668 [exp] 222 / 1e-70 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Lus10016998 [exp] 215 / 3e-68 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G045200 [exp] 301 / 6e-102 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.010G035900 [exp] 234 / 2e-75 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.002G082400 [exp] 231 / 4e-74 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.005G178900 [exp] 229 / 3e-73 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.016G074100 [exp] 227 / 2e-72 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.012G007400 [exp] 224 / 9e-72 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.015G004000 [exp] 223 / 2e-71 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.006G207400 [exp] 221 / 2e-70 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207300 [exp] 218 / 1e-69 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10037602 pacid=23167082 polypeptide=Lus10037602 locus=Lus10037602.g ID=Lus10037602.BGIv1.0 annot-version=v1.0 ATGAAATTTCTCAACAGGATTTCTCTGGTTCTACTCCTGCTCTCCCACTCGTTTCTGGGAATCAGTCTCTGCTCCTCATCGGGGGACTTCTCGAAGAGGT TTCTCAGTTTCGCGAAGGAAGACGGCTTTTTCGACTGGATGGTGGGTATAAGGAGGAAGATACATGAAAATCCTGAATTGGGTTATGAGGAATTCGAGAC CAGTAAGCTGATTAGAGCCGAGCTAGATAAACTGGGCGTCGAGTATAAGTACCCTCTAGCTGTTACTGGTATTGTTGGGTTCATCGGAACTGGAAAGGCT CCCTTTGTTGCCTTGCGAGCTGATATGGATGCTCTCGCTATGCAGGAAATGGTGGAATGGGAGCACAAGAGTAAGGTTCCTGGAAAGATGCATGCTTGTG GCCACGATGCTCATGTGGCAATGCTCCTCGGTGCAGCAAAGATCCTTCAAGAGCATCGAGACGAATTGAAGGGCACAGTAGTCCTCCTCTTTCAACCGGC GGAGGAAGGAGGAGGCGGCGCGAAGAAAATGATCGATGCTGGAGCCTTAGACAACGTGAATGCAATTTTCGGATTCAACGTCTCGTTCCGCGAGAAGCAG ATCCGCTAG
AA sequence Show only first row Show all	>Lus10037602 pacid=23167082 polypeptide=Lus10037602 locus=Lus10037602.g ID=Lus10037602.BGIv1.0 annot-version=v1.0 MKFLNRISLVLLLLSHSFLGISLCSSSGDFSKRFLSFAKEDGFFDWMVGIRRKIHENPELGYEEFETSKLIRAELDKLGVEYKYPLAVTGIVGFIGTGKA PFVALRADMDALAMQEMVEWEHKSKVPGKMHACGHDAHVAMLLGAAKILQEHRDELKGTVVLLFQPAEEGGGGAKKMIDAGALDNVNAIFGFNVSFREKQ IR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037602 [exp]	0	1
AT4G03000			RING/U-box superfamily protein...		Lus10041245 [exp]	4.8	0.8043
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10023073 [exp]	12.5	0.7743
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10022155 [exp]	12.8	0.7933
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10001021 [exp]	13.9	0.7968
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10023477 [exp]	14.5	0.7741
AT4G39140			RING/U-box superfamily protein...		Lus10041970 [exp]	17.7	0.7499
AT3G16270			ENTH/VHS family protein (.1)		Lus10038289 [exp]	19.3	0.7429
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Lus10025824 [exp]	20.2	0.7427
AT4G39140			RING/U-box superfamily protein...		Lus10017978 [exp]	22.1	0.7560
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10038699 [exp]	26.1	0.7535

Compare expression of checked genes

Lus10037602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.