Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52370 235 / 6e-78 Ribosomal protein L22p/L17e family protein (.1.2.3) AT4G28360 235 / 7e-78 Ribosomal protein L22p/L17e family protein (.1) ATCG00810 45 / 6e-06 ATCG00810.1, RPL22 ribosomal protein L22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006865 [exp] 352 / 5e-124 AT4G28360 314 / 2e-108 Ribosomal protein L22p/L17e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G067100 [exp] 253 / 1e-84 AT4G28360 297 / 2e-101 Ribosomal protein L22p/L17e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00237 [flax] [poplar] Ribosomal_L22 Ribosomal protein L22p/L17e
Representative CDS sequence Show only first row Show all	>Lus10037603 pacid=23167031 polypeptide=Lus10037603 locus=Lus10037603.g ID=Lus10037603.BGIv1.0 annot-version=v1.0 ATGCTGGCTTATGCCTCGGAGGAGAAACCTATTCCATCCCCGTTGACTCCTATGCTCGCTTTAGGTGACGGAAAAGATGAAGAACAGAAGGAGGCCTCCA AACCTGCGAAAGTTCAAGCTGTACTGAAGGGAATAAAGCAGAGTCCAAAGAAGGTAAATTTGGTAGCTGCGCTAGTTCGTGGCATGCGAGTTGAAGATGC ATTATTGCAGCTGCAAGTGACCGTAAAACGAGCTGCAAAGACCGTTTACCAGGTTATACATTCGGCACGAGCAAATGCAACACACAATCATGGCCTGGAT CGAGACCGCCTGCTCGTCGGTAAGAAGACAGCACTGACTTTTACATTTCTGAGTTTGACTCGAGCTTTTGCTCTCTTGCTCTCTCATGCCATTCTATCTG CAGCTGAGGCATTCCTTGGGAAGGGTTACTACAAGAAGAGAGTCTCGTATCATTCCAAAGGGAGGCACGGCATCAAAATGAGACCCGAGTGTCGTTTAAC TGTGGTGGTGAGGGAGACAACCCCCGAGGAGGAGGCTGAGATTGCAAGGCTAAAGGTGCACAACTTCCGCAAGCTGAATAAACGAGAGAGCCGACTCGTG CCCCACAAACTCATCGAGGTCGATCCAGTTTGGGGCCGCAAAGGGAAAAGAGCGAACCATGAAGCTGCAACGAGGCGAGAGGCTTGA
AA sequence Show only first row Show all	>Lus10037603 pacid=23167031 polypeptide=Lus10037603 locus=Lus10037603.g ID=Lus10037603.BGIv1.0 annot-version=v1.0 MLAYASEEKPIPSPLTPMLALGDGKDEEQKEASKPAKVQAVLKGIKQSPKKVNLVAALVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANATHNHGLD RDRLLVGKKTALTFTFLSLTRAFALLLSHAILSAAEAFLGKGYYKKRVSYHSKGRHGIKMRPECRLTVVVRETTPEEEAEIARLKVHNFRKLNKRESRLV PHKLIEVDPVWGRKGKRANHEAATRREA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10037603 [exp]	0	1
AT5G23535			KOW domain-containing protein ...		Lus10022069 [exp]	2.0	0.9381
AT2G04630		NRPE6B, NRPB6B	RNA polymerase Rpb6 (.1)		Lus10015000 [exp]	2.4	0.9261
AT3G22660			rRNA processing protein-relate...		Lus10037050 [exp]	3.5	0.9242
AT3G17300		EMB2786	unknown protein		Lus10037835 [exp]	4.6	0.9192
AT3G22320		RPB5A, NRPD5, N...	RNA POLYMERASE II FIFTH LARGES...		Lus10001335 [exp]	6.0	0.9207
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10017682 [exp]	6.3	0.9173
AT4G13720			Inosine triphosphate pyrophosp...		Lus10011757 [exp]	7.4	0.8839
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	9.6	0.9255
AT5G30490			unknown protein		Lus10037824 [exp]	10.2	0.8987
AT5G38720			unknown protein		Lus10023232 [exp]	10.8	0.8980

Compare expression of checked genes

Lus10037603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.