Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44940 53 / 1e-08 F-box/RNI-like superfamily protein (.1) AT5G22670 53 / 1e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56700 52 / 4e-08 FBD / Leucine Rich Repeat domains containing protein (.1) AT5G53640 51 / 5e-08 unknown protein AT3G49150 51 / 5e-08 F-box/RNI-like superfamily protein (.1) AT1G66320 50 / 2e-07 F-box/RNI-like superfamily protein (.1) AT5G44960 49 / 3e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22700 47 / 2e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78750 46 / 3e-06 F-box/RNI-like superfamily protein (.1) AT2G42730 46 / 4e-06 F-box family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006866 [exp] 300 / 1e-98 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10010664 [exp] 50 / 2e-07 AT1G61320 125 / 6e-31 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10034733 [exp] 49 / 3e-07 AT1G61320 110 / 5e-26 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10034414 [exp] 49 / 4e-07 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 46 / 4e-06 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 44 / 1e-05 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10011971 [exp] 44 / 2e-05 AT1G61320 103 / 2e-23 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10018433 [exp] 42 / 0.0001 AT1G61330 109 / 2e-25 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10040760 [exp] 40 / 0.0004 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G395000 [exp] 77 / 8e-17 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.012G099400 [exp] 71 / 7e-15 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.017G146500 [exp] 61 / 2e-11 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.017G146400 [exp] 54 / 9e-09 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1) Potri.017G146300 [exp] 53 / 1e-08 AT5G02700 71 / 8e-13 F-box/RNI-like superfamily protein (.1) Potri.010G134200 [exp] 44 / 2e-05 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.013G151700 [exp] 42 / 5e-05 AT4G14096 87 / 2e-18 F-box/RNI-like superfamily protein (.1) Potri.011G042900 [exp] 41 / 0.0001 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037604 pacid=23167138 polypeptide=Lus10037604 locus=Lus10037604.g ID=Lus10037604.BGIv1.0 annot-version=v1.0 ATGTTCATGAACTACGTAACCAACACCCTGAAGAGTCGTATCGAGCAAGAAGGGTCGAGCATACAGAAATTTGCTCTTCTGATGACATCTTTCGACCCGG AGATGTCTACTGATCTCAAACAGTGGATAAGATCCGTTACTGAAAGCAACATCCAAGAGTTGGACCTCTGCTTCCCAAGCAAGAACAGGTTGTATACATT GTCCCAGAACGTGTTCACGGTCGAGAAGCTAACATCATTACGCGTTTCCGGCTGTAACTTGAAGAATTGCAAGGTCATCAACCTTCCGAATCTTCGAAAG CTATCCCTCGAAAGACTCCATGTTGATGAGAAGATACTGCAAGGTCTCATCTCAAGTTGTCCTCTAATTGACGACTTGAGACTGATACAATGCACTACCG GGTTTCAACGGCTGCTTCTTTCGAGCAACAAGCTCTCTAGAGTCGATCTGCATCTCTGCCGTAGGCTCCAGCAAGTCGAACTCTAA
AA sequence Show only first row Show all	>Lus10037604 pacid=23167138 polypeptide=Lus10037604 locus=Lus10037604.g ID=Lus10037604.BGIv1.0 annot-version=v1.0 MFMNYVTNTLKSRIEQEGSSIQKFALLMTSFDPEMSTDLKQWIRSVTESNIQELDLCFPSKNRLYTLSQNVFTVEKLTSLRVSGCNLKNCKVINLPNLRK LSLERLHVDEKILQGLISSCPLIDDLRLIQCTTGFQRLLLSSNKLSRVDLHLCRRLQQVEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53635			F-box/RNI-like/FBD-like domain...		Lus10037604 [exp]	0	1
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022651 [exp]	3.7	0.7578
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10029336 [exp]	19.4	0.6991
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	24.0	0.7149
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10026189 [exp]	27.3	0.6782
AT2G34930			disease resistance family prot...		Lus10016337 [exp]	27.5	0.6429
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10016771 [exp]	32.7	0.6884
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	41.6	0.6447
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007044 [exp]	43.6	0.6197
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10002849 [exp]	48.5	0.6427
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10017299 [exp]	49.9	0.6544

Compare expression of checked genes

Lus10037604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.