Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73040 149 / 8e-44 Mannose-binding lectin superfamily protein (.1) AT1G19715 93 / 2e-20 Mannose-binding lectin superfamily protein (.1.2.3) AT1G52030 70 / 7e-13 MBP1.2, F-ATMBP, MBP2 myrosinase-binding protein 2 (.1.2) AT1G52070 68 / 1e-12 Mannose-binding lectin superfamily protein (.1) AT3G16440 67 / 2e-12 ATMLP-300B, MEE36 maternal effect embryo arrest 36, myrosinase-binding protein-like protein-300B (.1) AT1G52060 67 / 3e-12 Mannose-binding lectin superfamily protein (.1) AT3G16420 65 / 1e-11 JAL30, PBP1 JACALIN-RELATED LECTIN 30, PYK10-binding protein 1 (.1.2.3) AT3G16430 64 / 2e-11 JAL31 jacalin-related lectin 31 (.1.2) AT1G52040 64 / 6e-11 ATMBP, MBP1 myrosinase-binding protein 1 (.1) AT3G16450 62 / 1e-10 JAL33 Jacalin-related lectin 33, Mannose-binding lectin superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006866 [exp] 540 / 0 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10024290 [exp] 110 / 2e-26 AT1G19715 607 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Lus10024291 [exp] 102 / 1e-23 AT1G19715 438 / 1e-146 Mannose-binding lectin superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G140001 [exp] 168 / 7e-51 AT1G73040 214 / 1e-71 Mannose-binding lectin superfamily protein (.1) Potri.005G232500 [exp] 108 / 1e-25 AT1G19715 486 / 2e-166 Mannose-binding lectin superfamily protein (.1.2.3) Potri.002G030400 [exp] 107 / 3e-25 AT1G19715 590 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Potri.005G232400 [exp] 106 / 4e-25 AT1G19715 609 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Potri.017G010900 [exp] 61 / 4e-10 AT3G16460 135 / 5e-34 jacalin-related lectin 34, Mannose-binding lectin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0568 [flax] [poplar] Man_lectin PF01419 [flax] [poplar] Jacalin Jacalin-like lectin domain
Representative CDS sequence Show only first row Show all	>Lus10037605 pacid=23167188 polypeptide=Lus10037605 locus=Lus10037605.g ID=Lus10037605.BGIv1.0 annot-version=v1.0 ATGGACCCTTCCAGTTTGAAAGAAGCGAACTTGTATCTCGAGTGGGGGATTAAGAACCAGACCAAAACCGGCTTCTACTATGACGAGGACAACAAAGCTC GATTCGCTAAGCTGCAAGAGTTTCTGGAGAAGTTTGATCATTCCTTGGGTTTGAAGTTACTTGTCCATTCCAAAAAGACTGTCATGGTACACGAAGACAG GAGCAAGATCTTGCTTCCTCCAATGTACGATATCGAGCTCGAAGTCGTTAGACCATCATTGGGCTTCGAAGATCTAGTAGATAACGTTCTCCGTAAGGGG CATCCTTGTCATTGTTCATCGTATCGCCTGCAATCACAGATCTTTCCTAGAGCGCGAAGGCAACGGACATCGTCGCTGGCAGTTCGAATCTTTCCTGAGT GGTTTACATGGTTGAAGCAGAATTCCTCTGCGGTCGGCAATATAACCGCCTTCACGCTGACCTGGATAGCCCCCGAGAGGCTTAATGCAGCTGACCTGGA ACACAACAGGGGAAGGAGCTCGAAGATCGTGCTGCAGGCAGGACCGTGGGGAGGGACCGGAGGGAGCAGTTGGGATGACGGAGCTCACCGTGGCGTCAAG GAGATCAAGCTCGTCTACGACCGTTGTGTAGATTCGATCAGGCTTGTATACGAGAAGAAGGGTGGGAAGACCGTCGTTGGAGAGAGACATGGTGGCCTTG GAGGCACCAAGACCGCTGAGATTAAACTGCAATACCCTGATGAGTACTTGACCCAAATACACGGATACTACCACCCGGTCGTCCATGGCGGCCACCCAGT GATCCGGTCGCTAACATTCAAGACCAACAAGAGGAGATTCGGGCCTTTCGGTGTTGAAGAAGGCACTCCCTTTACACAGAACTTGGCTGGAGTTTCTGTG GTGGGATTCAATGGCAGAGGTGGCTGGTACTTGGACTCCATTGGTGTTCACTATGTTGAAGGCAACAAGTCCAAGACCATCTTCACAAAGCTTCAGCAGA AGCTTCAAAGGATCTCTTCGGTCGCGAGACCTTCAAGGGATACTAGAACAGCCTATTAG
AA sequence Show only first row Show all	>Lus10037605 pacid=23167188 polypeptide=Lus10037605 locus=Lus10037605.g ID=Lus10037605.BGIv1.0 annot-version=v1.0 MDPSSLKEANLYLEWGIKNQTKTGFYYDEDNKARFAKLQEFLEKFDHSLGLKLLVHSKKTVMVHEDRSKILLPPMYDIELEVVRPSLGFEDLVDNVLRKG HPCHCSSYRLQSQIFPRARRQRTSSLAVRIFPEWFTWLKQNSSAVGNITAFTLTWIAPERLNAADLEHNRGRSSKIVLQAGPWGGTGGSSWDDGAHRGVK EIKLVYDRCVDSIRLVYEKKGGKTVVGERHGGLGGTKTAEIKLQYPDEYLTQIHGYYHPVVHGGHPVIRSLTFKTNKRRFGPFGVEEGTPFTQNLAGVSV VGFNGRGGWYLDSIGVHYVEGNKSKTIFTKLQQKLQRISSVARPSRDTRTAY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73040			Mannose-binding lectin superfa...		Lus10037605 [exp]	0	1
AT5G21910			unknown protein		Lus10038069 [exp]	3.0	0.9382
AT1G07400			HSP20-like chaperones superfam...		Lus10022604 [exp]	3.5	0.9242
AT5G22390			Protein of unknown function (D...		Lus10004863 [exp]	3.5	0.9105
					Lus10033890 [exp]	3.7	0.9366
					Lus10016909 [exp]	5.6	0.8867
AT2G39440			unknown protein		Lus10040607 [exp]	5.7	0.9333
AT5G05365			Heavy metal transport/detoxifi...		Lus10040965 [exp]	7.7	0.9252
AT2G48020			Major facilitator superfamily ...		Lus10008183 [exp]	7.8	0.8649
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10026779 [exp]	8.9	0.9176
AT2G39440			unknown protein		Lus10018300 [exp]	9.4	0.9318

Compare expression of checked genes

Lus10037605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.