Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17730 345 / 1e-122 CHMP1B, VPS46.1 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1B, vacuolar protein sorting 46.1 (.1) AT1G73030 338 / 5e-120 CHMP1A, VPS46.2 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1A, SNF7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006868 [exp] 377 / 3e-135 AT1G17730 378 / 1e-135 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1B, vacuolar protein sorting 46.1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G194400 [exp] 341 / 4e-121 AT1G73030 340 / 1e-120 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1A, SNF7 family protein (.1) Potri.006G158538 [exp] 341 / 4e-121 AT1G73030 340 / 1e-120 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1A, SNF7 family protein (.1) Potri.003G045300 [exp] 333 / 8e-118 AT1G73030 335 / 1e-118 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1A, SNF7 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [flax] [poplar] PspA PF03357 [flax] [poplar] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Lus10037607 pacid=23167219 polypeptide=Lus10037607 locus=Lus10037607.g ID=Lus10037607.BGIv1.0 annot-version=v1.0 ATGGGGAATACGGAGAAGCTGATGAACCAGATAATGGAGCTGAAGTTCGTGGCGAAGACGCTGCAGAGGCAGGCGAGGAAGTGCGAGAAGGAAGAGAAAG CGGACAAGCTGAAGGTGAAGAAGGCGATCGAGAAAGGGAACATGGACGGAGCTAGGATTTACGCCGAGAACGCCATCAGGAAGAGGAACGAGCAGATGAA CTACCTTAGGCTCTCTTCCAGGCTCGACGCCGTCGTCGCCAGGCTCGATACTCAAGCCAAGATGACCACCATCAACAAGTCCATGGCCAACATCGTCAAA TCGCTGGAGTCTTCTCTCGCCACCAGTAACCTGCAGAAGATGTCGGAGACGATGGACCAATTCGAGAAGCAATTTGTGAACATGGAGGTGCAAGCAGAGT TCATGGAGAACGCAATGGCTGGTTCGACCTCATTGTCCACACCAGAGGGAGAAGTGAACAGTTTGATGCAGCAAGTGGCCGACAACTATGGACTGGAAGT CTCGGTCGGGCTCCCGCAGCCAGCTGCACATGCCGTGCCAACCAAATCGTCGGAGAAGGTTGACGAGGATGATTTGACCAGGCGTCTTGCGGAGCTTAAG GCAAGGGGCTAA
AA sequence Show only first row Show all	>Lus10037607 pacid=23167219 polypeptide=Lus10037607 locus=Lus10037607.g ID=Lus10037607.BGIv1.0 annot-version=v1.0 MGNTEKLMNQIMELKFVAKTLQRQARKCEKEEKADKLKVKKAIEKGNMDGARIYAENAIRKRNEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMANIVK SLESSLATSNLQKMSETMDQFEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADNYGLEVSVGLPQPAAHAVPTKSSEKVDEDDLTRRLAELK ARG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10037607 [exp]	0	1
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017281 [exp]	1.0	0.8802
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10006868 [exp]	2.4	0.8440
AT1G12440			A20/AN1-like zinc finger famil...		Lus10006671 [exp]	3.2	0.8221
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043185 [exp]	3.5	0.8318
AT4G13270			Late embryogenesis abundant (L...		Lus10023631 [exp]	4.2	0.8063
AT1G12440			A20/AN1-like zinc finger famil...		Lus10007015 [exp]	4.5	0.8233
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10043076 [exp]	5.9	0.8034
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10014607 [exp]	8.0	0.7863
AT1G78310			VQ motif-containing protein (....		Lus10010346 [exp]	12.0	0.7836
AT3G53390			Transducin/WD40 repeat-like su...		Lus10000150 [exp]	12.8	0.7191

Compare expression of checked genes

Lus10037607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.