Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02130 255 / 1e-87 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT4G17530 252 / 2e-86 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT5G47200 248 / 9e-85 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) AT3G11730 220 / 7e-74 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT3G53610 164 / 1e-51 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT5G59840 164 / 2e-51 Ras-related small GTP-binding family protein (.1) AT3G46060 159 / 1e-49 ARA3, Ara-3, AtRABE1c, AtRab8A RAB GTPase homolog 8A (.1.2.3) AT3G09900 156 / 1e-48 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT5G03520 152 / 3e-47 ATRAB-E1D, AtRab8C, AtRABE1d ARABIDOPSIS RAB HOMOLOG E1D, RAB GTPase homolog 8C (.1.2) AT4G17160 135 / 2e-40 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000595 [exp] 249 / 2e-85 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10010999 [exp] 249 / 2e-85 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10036442 [exp] 228 / 8e-77 AT3G11730 350 / 2e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10041117 [exp] 228 / 7e-76 AT3G11730 302 / 3e-104 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10004361 [exp] 171 / 4e-55 AT5G47200 197 / 4e-65 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10023430 [exp] 166 / 8e-52 AT3G46060 364 / 3e-129 RAB GTPase homolog 8A (.1.2.3) Lus10007698 [exp] 163 / 2e-51 AT3G46060 378 / 1e-135 RAB GTPase homolog 8A (.1.2.3) Lus10024423 [exp] 163 / 2e-51 AT3G46060 376 / 7e-135 RAB GTPase homolog 8A (.1.2.3) Lus10025309 [exp] 162 / 5e-51 AT3G46060 374 / 1e-133 RAB GTPase homolog 8A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G081800 [exp] 270 / 8e-94 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.002G138400 [exp] 262 / 1e-90 AT1G02130 393 / 1e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G152800 [exp] 261 / 4e-90 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G080400 [exp] 259 / 2e-89 AT1G02130 387 / 2e-139 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.014G049400 [exp] 258 / 7e-89 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.003G004000 [exp] 229 / 1e-77 AT3G11730 359 / 2e-128 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.004G226600 [exp] 228 / 3e-77 AT3G11730 364 / 4e-130 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.008G051700 [exp] 160 / 3e-50 AT3G46060 329 / 7e-116 RAB GTPase homolog 8A (.1.2.3) Potri.001G236100 [exp] 159 / 8e-50 AT5G59840 333 / 1e-117 Ras-related small GTP-binding family protein (.1) Potri.009G027900 [exp] 159 / 1e-49 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10037608 pacid=23167107 polypeptide=Lus10037608 locus=Lus10037608.g ID=Lus10037608.BGIv1.0 annot-version=v1.0 ATGTCGGTGCAGGATGATTCGTACATTGAAAGCTACATAAGTACCATTGGTGTTGACTTTTGGGATACTGCTGGTCAAGAACGATTTCGTACGATTACAA GCAGCTACTACCGTGGTGCACATGGCATAATCATTGTTTATGATGTCACGGACGAAGAAAGCTTCAACAATGTGAAGACATGGCTGACAGAAATTGACAA GTTCGCCACGGACAGCGTTAACAAGCTTCTGGTTGGGAACAAGTGCGATCTAACCTCGAAGCGAGTGGTTTCTTATGATACTGCCAAGGCATTTGCTGAT GAGATTGGGATCCCATTCCTGGAAACAAGTGCCAAGAGTGCTACGAATGTCGAGGATGCGTTCATGACCATGGCTTCTGAGATCAAGAAAAGAATGGCTA CACAGCCTGCGATGAACGCGACAAGGCCAACGACGGTGCCAATCCGGGGGAAGCCAGTTAACAACCAAAGTGGCAACTGCTGCTCATCTTAA
AA sequence Show only first row Show all	>Lus10037608 pacid=23167107 polypeptide=Lus10037608 locus=Lus10037608.g ID=Lus10037608.BGIv1.0 annot-version=v1.0 MSVQDDSYIESYISTIGVDFWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKTWLTEIDKFATDSVNKLLVGNKCDLTSKRVVSYDTAKAFAD EIGIPFLETSAKSATNVEDAFMTMASEIKKRMATQPAMNATRPTTVPIRGKPVNNQSGNCCSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Lus10037608 [exp]	0	1
AT3G52470			Late embryogenesis abundant (L...		Lus10021286 [exp]	1.0	0.9045
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10015301 [exp]	1.4	0.8895
AT5G10770			Eukaryotic aspartyl protease f...		Lus10042426 [exp]	5.7	0.7799
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	6.0	0.8408
AT4G09830			Uncharacterised conserved prot...		Lus10028732 [exp]	6.6	0.8048
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10020283 [exp]	6.9	0.8201
AT5G11090			serine-rich protein-related (....		Lus10001946 [exp]	7.2	0.8296
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	7.4	0.8222
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10020241 [exp]	7.9	0.8188
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10003971 [exp]	8.9	0.7945

Compare expression of checked genes

Lus10037608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.