Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19730 221 / 2e-75 Ribosomal L28e protein family (.1.2.3) AT4G29410 218 / 3e-74 Ribosomal L28e protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006869 [exp] 301 / 1e-106 AT2G19730 218 / 3e-74 Ribosomal L28e protein family (.1.2.3) Lus10012914 [exp] 225 / 5e-77 AT4G29410 224 / 7e-77 Ribosomal L28e protein family (.1.2) Lus10012915 [exp] 224 / 1e-76 AT4G29410 224 / 1e-76 Ribosomal L28e protein family (.1.2) Lus10032699 [exp] 217 / 9e-74 AT4G29410 219 / 1e-74 Ribosomal L28e protein family (.1.2) Lus10032698 [exp] 107 / 8e-30 ND 134 / 1e-40
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G045500 [exp] 237 / 9e-82 AT2G19730 230 / 3e-79 Ribosomal L28e protein family (.1.2.3) Potri.001G194000 [exp] 222 / 1e-75 AT2G19730 227 / 1e-77 Ribosomal L28e protein family (.1.2.3) Potri.006G212501 [exp] 42 / 9e-06 AT4G29410 45 / 2e-07 Ribosomal L28e protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01778 [flax] [poplar] Ribosomal_L28e Ribosomal L28e protein family
Representative CDS sequence Show only first row Show all	>Lus10037609 pacid=23167346 polypeptide=Lus10037609 locus=Lus10037609.g ID=Lus10037609.BGIv1.0 annot-version=v1.0 ATGGCGACAGTATCTGAGCAGCTCATTTGGGAGGTTGTGAAGAGGAACAATTCGTTTCTCGTAAAGCAGTTCGGGAGAGGAACTTCTGGCATCGTCTTCA GCAAAGAGAGCAACAATCTGTACAATCTCAACTCGTACAAGCACTCCGGGTTGGCAAATAAGAAGACGGTGACGATTCAGCCAGCAGAAAAGGAACAAGC TGTGGTACTTGCTACAACCAAGACGAAGAAGCAGAACAAACCATCTGCATTGGTTCACAAGTCTGTCCTGAAGAAGGAGTTCTATCGCATGGCTAAGGCC GTGTTGAACCAGGTGGGCGATAACTTCTACAGGCCGGACCTGAAGAAAGCTGCACTTGCAAGGCTGAGTGCTGTGAACAGAGGCCTCAAGGTTTCAAAGT CTGGAATCAAGAAGAGGACCAGACAAGCCACCAAGATCCATGGGAGGAAGTGA
AA sequence Show only first row Show all	>Lus10037609 pacid=23167346 polypeptide=Lus10037609 locus=Lus10037609.g ID=Lus10037609.BGIv1.0 annot-version=v1.0 MATVSEQLIWEVVKRNNSFLVKQFGRGTSGIVFSKESNNLYNLNSYKHSGLANKKTVTIQPAEKEQAVVLATTKTKKQNKPSALVHKSVLKKEFYRMAKA VLNQVGDNFYRPDLKKAALARLSAVNRGLKVSKSGIKKRTRQATKIHGRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19730			Ribosomal L28e protein family ...		Lus10037609 [exp]	0	1
AT3G10950			Zinc-binding ribosomal protein...		Lus10006414 [exp]	1.0	0.9174
AT2G19730			Ribosomal L28e protein family ...		Lus10006869 [exp]	2.0	0.9028
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10016992 [exp]	2.4	0.9116
AT3G12390			Nascent polypeptide-associated...		Lus10041610 [exp]	2.8	0.8878
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10006914 [exp]	3.5	0.9060
AT5G02610			Ribosomal L29 family protein ...		Lus10025292 [exp]	3.9	0.9010
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10010993 [exp]	6.2	0.8485
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10041029 [exp]	6.5	0.9000
AT4G38370			Phosphoglycerate mutase family...		Lus10014434 [exp]	6.6	0.8008
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10006609 [exp]	8.8	0.8974

Compare expression of checked genes

Lus10037609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.