Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51710 347 / 6e-116 ATUBP6, UBP6 ubiquitin-specific protease 6 (.1.2) AT3G21280 332 / 6e-109 UBP7 ubiquitin-specific protease 7 (.1) AT3G49600 50 / 4e-06 SUP32, ATUBP26, UBP26 ubiquitin-specific protease 26 (.1) AT4G30890 47 / 3e-05 UBP24 ubiquitin-specific protease 24 (.1.2.3) AT5G57990 46 / 6e-05 UBP23 ubiquitin-specific protease 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006870 [exp] 410 / 2e-137 AT1G51710 691 / 0.0 ubiquitin-specific protease 6 (.1.2) Lus10032623 [exp] 57 / 2e-08 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10029686 [exp] 55 / 1e-07 AT3G49600 1255 / 0.0 ubiquitin-specific protease 26 (.1) Lus10042726 [exp] 55 / 1e-07 AT3G49600 1296 / 0.0 ubiquitin-specific protease 26 (.1) Lus10043127 [exp] 51 / 2e-06 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 48 / 2e-05 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10019766 [exp] 45 / 0.0001 AT4G30890 520 / 0.0 ubiquitin-specific protease 24 (.1.2.3) Lus10036607 [exp] 44 / 0.0002 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10035825 [exp] 44 / 0.0003 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197400 [exp] 370 / 3e-124 AT3G21280 727 / 0.0 ubiquitin-specific protease 7 (.1) Potri.003G033700 [exp] 356 / 6e-119 AT3G21280 716 / 0.0 ubiquitin-specific protease 7 (.1) Potri.005G179500 [exp] 56 / 4e-08 AT3G49600 1245 / 0.0 ubiquitin-specific protease 26 (.1) Potri.002G081600 [exp] 54 / 3e-07 AT3G49600 1251 / 0.0 ubiquitin-specific protease 26 (.1) Potri.003G202800 [exp] 52 / 6e-07 AT4G30890 577 / 0.0 ubiquitin-specific protease 24 (.1.2.3) Potri.003G092400 [exp] 45 / 7e-05 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.018G123200 [exp] 44 / 0.0002 AT5G10790 465 / 2e-158 ubiquitin-specific protease 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10037610 pacid=23167345 polypeptide=Lus10037610 locus=Lus10037610.g ID=Lus10037610.BGIv1.0 annot-version=v1.0 ATGCTTACAGTGAGCGTTAAATGGCAGAAGGAGATGTTTCAAAAGGTTGAGATTGATACAACGCAGCCTCCTTATGTCTTCAAATGTCAGTTGTTTGATT TGACTGGCGTGCCTCCCGAGAGACAGAAGATTATGGTGAAGGGTGCTTTGTTGCAGGACGATGGAGATTGGGCAACAATTGGTGTAAAGCAGGGTCAAAG GTTGATGATGATGGGAACTGCTGATGAGATTGTGAACGCTCCAGAGAAAGGCCCTGTTTTTGTTGAAGATCTTCCAGAAGAAGAACAAGTTGCTGCTGTG AAAGTGGATTATCCTTTGGTGTTGGATATCTTTGATCTCTGTTCAGACGATCTCCGCAAACAATTGGAAGCACCACGCAAGCTGTTGAGAGAGGAAGAAG GTAAAAAAGCTGGTTTGAAGGGCAAGGAGAAGACGGACTCGAAAGACACCGATGTGAAGATGACTGATGCAGAGGGATCATCTGGCGGTGAATCATCGAA AGCTCCATCTGAAAAAACCGAACAGCTTACTGGAATATATGATTTGGTTGCCGTCCTCACTCACAAGGGAAGAAGTGCCGATTCGGGGCATTACGTTGCC AAAAAAACCCTTGAAAATGTCGATGCACTGAAGGAGATTTTTGGTGTTGAGCTTGTAAGCAGGGTTCATTGCCAGGAAAGTGGTGAAGAAAGTCCAGAGA CAGAATCTGTCTATTCACTAAAATGCCACATATCACAAGAGGTGAACCACATGCATGAAGGATTGAAACATGGTTTGAAATCGGAATTGGAGAAGGCCTC TCCAGCTTTGGGGCGCAGTGCTATTTTCTTGAAAGAGTCTCGTATTAATGCCTTACCGCGGTACTTAACCGTCCAATTTGTTCGCTTCTTCTGGAAGAGG GAGTCAAACCAGAAAGCCAAGATTTTGAGGAAAGTGGATTATCCTTTGGTGTTGGATATCTTTGATCTCTGTTCAGACGATCTCCGCAAACAATTGGAAG CACCACGCAAGCTGTTGAGAGAGGAAGAAGGTAAAAAAGCTGGTTTGAAGGGCAAGGAGAAGACGGACTCGAAAGACACCGATGTGAAGATGACTGATGC AGAGGGATCATCTGGCGGTGAATCATCGAAAGCTCCATCTGAAAAAACCGAACAGCTTACTGGAATATATGATTTGGTTGCCGTCCTCACTCACAAGGGA AGAAGTGCCGATTCGGGGCATTACGTTGCCTGGGTGAAGCAAGAGAACGGCAAGTGGATCGAGTTTGACGATGATAGTCCCATCCCACAGCGGGAAGAAG ATATCGTTAAGCTATCCGGAGGAGGTGATTGGCATATGGCATACATTTGCATGTACAAGGCTCGCACCATACCGATGTAA
AA sequence Show only first row Show all	>Lus10037610 pacid=23167345 polypeptide=Lus10037610 locus=Lus10037610.g ID=Lus10037610.BGIv1.0 annot-version=v1.0 MLTVSVKWQKEMFQKVEIDTTQPPYVFKCQLFDLTGVPPERQKIMVKGALLQDDGDWATIGVKQGQRLMMMGTADEIVNAPEKGPVFVEDLPEEEQVAAV KVDYPLVLDIFDLCSDDLRKQLEAPRKLLREEEGKKAGLKGKEKTDSKDTDVKMTDAEGSSGGESSKAPSEKTEQLTGIYDLVAVLTHKGRSADSGHYVA KKTLENVDALKEIFGVELVSRVHCQESGEESPETESVYSLKCHISQEVNHMHEGLKHGLKSELEKASPALGRSAIFLKESRINALPRYLTVQFVRFFWKR ESNQKAKILRKVDYPLVLDIFDLCSDDLRKQLEAPRKLLREEEGKKAGLKGKEKTDSKDTDVKMTDAEGSSGGESSKAPSEKTEQLTGIYDLVAVLTHKG RSADSGHYVAWVKQENGKWIEFDDDSPIPQREEDIVKLSGGGDWHMAYICMYKARTIPM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51710		ATUBP6, UBP6	ubiquitin-specific protease 6 ...		Lus10037610 [exp]	0	1
AT1G51710		ATUBP6, UBP6	ubiquitin-specific protease 6 ...		Lus10006870 [exp]	2.8	0.8030
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10021905 [exp]	3.2	0.8205
AT4G24820			26S proteasome, regulatory sub...		Lus10014789 [exp]	4.0	0.7910
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Lus10009294 [exp]	5.3	0.7975
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010211 [exp]	6.5	0.8008
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10004805 [exp]	8.9	0.8331
AT4G11790			Pleckstrin homology (PH) domai...		Lus10006338 [exp]	10.1	0.8126
AT4G24820			26S proteasome, regulatory sub...		Lus10017932 [exp]	12.6	0.8024
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10041189 [exp]	13.1	0.7876
AT2G33630			NAD(P)-binding Rossmann-fold s...		Lus10013202 [exp]	19.3	0.7277

Compare expression of checked genes

Lus10037610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.