Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51730 294 / 4e-101 Ubiquitin-conjugating enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006873 [exp] 360 / 4e-127 AT1G51730 328 / 3e-114 Ubiquitin-conjugating enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G199500 [exp] 317 / 3e-110 AT1G51730 294 / 7e-101 Ubiquitin-conjugating enzyme family protein (.1) Potri.001G193700 [exp] 300 / 1e-103 AT1G51730 303 / 1e-104 Ubiquitin-conjugating enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF05773 [flax] [poplar] RWD RWD domain
Representative CDS sequence Show only first row Show all	>Lus10037613 pacid=23167152 polypeptide=Lus10037613 locus=Lus10037613.g ID=Lus10037613.BGIv1.0 annot-version=v1.0 ATGGAAATTGAAGCACTGGAAGCTATACTCATGGACGAGTTCAAAGAAATCCGTTCCAGTGAGAGTGGCTTGAATACTTCAGCTCGGTGTTTCCAGATAA CGATATCTCCACAGGATGATGATATAGACCAGTCAACAACGACACCAGTTCAGCTAGGCTTAATATTCGCCCACACAGAAAAATATCCAGATGAGCCTCC ACTATTACATGTGACAAGTATAAAAGGTGTGCAACCAAGTGATCTTAAGACGTTGAAGGAGAAGCTTGAACAAGAGGCATCTGAAAATCTTGGAATGGCA ATGGTCTACACATTGGTTACATCAGCTAAAGAGTGGCTATCTGACTTATGTGGTCAAGACGATGAGGACGATGATGCCGCGGATTTGGAGGCGACCAAGG ACGATGTGATTATACCACATGGAGAACCTGTTACCGTCGAGACTTTTCTAGCATGGAGAGAGAAATTCGAAGCAGAGCTGGCACTTGAGCGAGCAAAGTT GATGCCTGAGTTTGCACTCACCGTCACAAAGGAGAAGAAGCTTACCGGAAGACAGTGGTTCGAGAGTGGAAAAGGGAGAGGTGCAGCAGCAGCAGCCACT GAAGGCTCAGAGGAGGAAGACGAAGACGATATTGATTTTGATGACGAGGATTTTGATGACGACGAAGACATGCTGGAGCACTACCTTGCTGAGAAATCTG ACTCGTCATCTCATCATTCCTCTATGAGAGCCGGTTAG
AA sequence Show only first row Show all	>Lus10037613 pacid=23167152 polypeptide=Lus10037613 locus=Lus10037613.g ID=Lus10037613.BGIv1.0 annot-version=v1.0 MEIEALEAILMDEFKEIRSSESGLNTSARCFQITISPQDDDIDQSTTTPVQLGLIFAHTEKYPDEPPLLHVTSIKGVQPSDLKTLKEKLEQEASENLGMA MVYTLVTSAKEWLSDLCGQDDEDDDAADLEATKDDVIIPHGEPVTVETFLAWREKFEAELALERAKLMPEFALTVTKEKKLTGRQWFESGKGRGAAAAAT EGSEEEDEDDIDFDDEDFDDDEDMLEHYLAEKSDSSSHHSSMRAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10037613 [exp]	0	1
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10005437 [exp]	1.4	0.9378
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10010093 [exp]	2.2	0.9202
AT4G14420			HR-like lesion-inducing protei...		Lus10041149 [exp]	3.3	0.9061
					Lus10014678 [exp]	3.7	0.9303
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	4.6	0.9171
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	6.0	0.9273
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	6.3	0.9128
AT1G50575			Putative lysine decarboxylase ...		Lus10003762 [exp]	7.9	0.9124
AT3G18760			Translation elongation factor...		Lus10038301 [exp]	10.1	0.8919
AT5G62980		FOLB2	Dihydroneopterin aldolase (.1)		Lus10021252 [exp]	10.7	0.8772

Compare expression of checked genes

Lus10037613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.