Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21295 351 / 6e-112 Tudor/PWWP/MBT superfamily protein (.1) AT1G51745 320 / 6e-101 Tudor/PWWP/MBT superfamily protein (.1.2) AT3G03140 164 / 2e-42 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006874 [exp] 1225 / 0 AT1G51745 338 / 1e-106 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10004108 [exp] 160 / 2e-41 AT3G03140 311 / 3e-95 Tudor/PWWP/MBT superfamily protein (.1) Lus10013363 [exp] 160 / 2e-41 AT3G03140 322 / 1e-99 Tudor/PWWP/MBT superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G045600 [exp] 598 / 0 AT1G51745 362 / 4e-116 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.001G193900 [exp] 572 / 0 AT1G51745 360 / 3e-115 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.019G048100 [exp] 160 / 5e-41 AT3G03140 364 / 3e-114 Tudor/PWWP/MBT superfamily protein (.1) Potri.013G081400 [exp] 159 / 8e-41 AT3G03140 202 / 5e-55 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037614 pacid=23166997 polypeptide=Lus10037614 locus=Lus10037614.g ID=Lus10037614.BGIv1.0 annot-version=v1.0 ATGGGTAGCTCTGCTTCTGATGAACCAAACATTAGCGATGGGAAAGCCATTGATGCGTCAGTGGGGAGTTTAGTGTGGGTTCGAAGGAGGAATGGGTCGT GGTGGCCGGGTCGGATTATGGGTATGGATGAGATTTCAGAGGATAGTTTGGTTTCTCCAAGATCAGGCACTCCAGTCAAGCTGCTTGGCAGGGAAGATGC TAGTGTGGATTGGTATAACCTTGAGAAGTCGAAGAGGGTGAAAGCATTTAGGTGTGGTGAATATGATGACTATATTGAGAAGGCTAGGGCTGCTGCAGCC AATGGTAATAGAAAAGCTGTTAAATATGCTCGTAGGGAAGATGCTATTCTGCACGCTCTTGAAATTGAGAATGCTCGACCAGTAAGGGATCATATGGATG TTGCGTCTGCATCGAATAATTTACACCCAGCCCGGGAATCAACGAGCGTGTCTCTTTCTGGAAAAGTAGATGAGGATGCCAGTGATGGTGGCAGTGATGC CAAGGGCTTGGAAAATGATTCAGGTCCTGTTTTGGATCCAAACCAGGGTTCAGATATTGACTCAGCGCCAGAATTATCGCAATCTGGAATATCTTTTGAA GAGCCGAATCATGTTGATGCATCGAAAGTGCCATCTCTACAAGGAAAGAGGAGGAAGACACCGAATGATTCTGAGGATGATGGGACAGAAGGAACTAAAC GTATGAGAGGACTCGAGGACCTTGGCATGGGCATAGCGGATTATAATGGTTGCAATGGTTTGTCTAATGGCAGTCCTGTTAATGTTAGGAAAAATTGCAG TCCATCTTTGAAGAGAAAGAGAACTCAAGTGGCAAATGTTCACGAGTTCTTGAAAAGGAGAAATCGCCGCAGGCCACTGACCAAGGTTTTGGAGAGTACA GCTATGGTGTCTATTCCAGTTGGCTGTGACCAAAGTGGTTCACCGCCGGAAAGATTGTCTGACAGCAAGGTCTCTGGTCTACAATCTAATGAATCTAGAA AAGGTCCTGTGGGTAATGCTAACTCTGACAGCACCGGGGTTTCATGTGAAAACGGTTCCTCCCTGAACCCTTCCGAACATGCTTGTGATGTTTCTCTCAC AGACAAGGTTGTCAAAGAGAAGGATATGCTTGCTCCAGCAAGATCATATCAGAATGACTCTTCAGACACGTTGTTCGATGTACCTTTTCTCGACGAAGAG AAACCCTCTCCAGGACATCTTCTCAGCAGATCCGGAGAGCAATCCAGTCCAGGATCGTTGCAGAACGAGACGATTAAAGAAGAGTCTGCTTCGAAATGGC AACTAAAAGGAAAGAGGAATTCCAGACACACGAAGAAGAACGGGAAACAAGTGAGGAAATACATGGATTTGGATGACGACGCCGGTCCTTATTTCCCAGT TGTAGAGCAGTTGGATGGATTCAACAACCAAACTCCTGACGGTACACTTGGTGCTAAAGATGAGCTCGATGGGTTCCAGGATTGGAACCGGTCTTACAAT TTCAGGGAGGATCTAGCTCTACCGTCTCAGAGAATGCTGCCATATCGTCAATCTCGGTTTATGCTCAATTCCCGGTACGAAACCACAGAGTTCCCTGTTA GGAAGGTAATCGCCGACGCGAACCTCTACGATGTGAAGCTGGAAGTGAAATCCAACTACCGGCCACAACACGTCCCATTGGTTTCCTTGATGAGCAAGTT CAACGGCAAAGCGATCGTGGGCCACCCTCTTACTGTAGAGGTTTTGAATGTCGGTGAAGATCCTAGGAAGAAGAGCTCGGGAGGTGGAAGAGTTGCTGCT GCTACGAAACGAATGTCACGGAAAAGGCGGTTTAAAAGAAAAGGAAGCAAAAGGCTGAGCAAGTCAGGACTGTTGTCAAAAAAGATCAGGAAGCTATCAT CGCTTACTGGCGGTAAGAAGGTAGAAGTCATGAAGAAAGCAAATGGATCTACTCCTGCTGCTGTAGTGGCTTATATTCCTCTGAAGCTAGTTTTCAGCCG GATAAACGAGGCAGTGAATGGCTCAGCACGGCACCCGACGTAA
AA sequence Show only first row Show all	>Lus10037614 pacid=23166997 polypeptide=Lus10037614 locus=Lus10037614.g ID=Lus10037614.BGIv1.0 annot-version=v1.0 MGSSASDEPNISDGKAIDASVGSLVWVRRRNGSWWPGRIMGMDEISEDSLVSPRSGTPVKLLGREDASVDWYNLEKSKRVKAFRCGEYDDYIEKARAAAA NGNRKAVKYARREDAILHALEIENARPVRDHMDVASASNNLHPARESTSVSLSGKVDEDASDGGSDAKGLENDSGPVLDPNQGSDIDSAPELSQSGISFE EPNHVDASKVPSLQGKRRKTPNDSEDDGTEGTKRMRGLEDLGMGIADYNGCNGLSNGSPVNVRKNCSPSLKRKRTQVANVHEFLKRRNRRRPLTKVLEST AMVSIPVGCDQSGSPPERLSDSKVSGLQSNESRKGPVGNANSDSTGVSCENGSSLNPSEHACDVSLTDKVVKEKDMLAPARSYQNDSSDTLFDVPFLDEE KPSPGHLLSRSGEQSSPGSLQNETIKEESASKWQLKGKRNSRHTKKNGKQVRKYMDLDDDAGPYFPVVEQLDGFNNQTPDGTLGAKDELDGFQDWNRSYN FREDLALPSQRMLPYRQSRFMLNSRYETTEFPVRKVIADANLYDVKLEVKSNYRPQHVPLVSLMSKFNGKAIVGHPLTVEVLNVGEDPRKKSSGGGRVAA ATKRMSRKRRFKRKGSKRLSKSGLLSKKIRKLSSLTGGKKVEVMKKANGSTPAAVVAYIPLKLVFSRINEAVNGSARHPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21295			Tudor/PWWP/MBT superfamily pro...		Lus10037614 [exp]	0	1
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Lus10006874 [exp]	1.0	0.8301
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10042871 [exp]	2.8	0.7691
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10001726 [exp]	3.5	0.7390
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Lus10032141 [exp]	12.2	0.7244
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10030207 [exp]	16.1	0.7040
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10008297 [exp]	19.2	0.7305
AT3G15120			P-loop containing nucleoside t...		Lus10017935 [exp]	20.0	0.7214
AT2G28480			RNA-binding CRS1 / YhbY (CRM) ...		Lus10034313 [exp]	25.5	0.6034
AT5G48385			FRIGIDA-like protein (.1)		Lus10002146 [exp]	26.1	0.7121
AT2G02370			SNARE associated Golgi protein...		Lus10012163 [exp]	40.2	0.6233

Compare expression of checked genes

Lus10037614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.