Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67120 82 / 1e-16 ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006876 [exp] 418 / 5e-132 AT1G67120 3664 / 0.0 ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding (.1) Lus10006875 [exp] 137 / 6e-35 AT1G67120 640 / 0.0 ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G039100 [exp] 152 / 4e-40 AT1G67120 4856 / 0.0 ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037616 pacid=23167209 polypeptide=Lus10037616 locus=Lus10037616.g ID=Lus10037616.BGIv1.0 annot-version=v1.0 ATGCCAATAGACGGAAGTTTCCTCCTAAAATCTGCACTGGAGAGGTTCCTTGGTCGTTGCCGGGAGCTTCAGAGCATTAAGAAGTTTGAAGATCTAGTAA AGAAGAAGATCATAGCGAAAGTGGTGAATTTACTCAGCCAATGCAATCTTACTTTCAGCGAAGATATCGGAGATTCTGTTGATGCAGAAGTGTTCATTCT TGAGCATTATACACGAAGTAGGAAGGGTTTATATCTTCATGAGCTTGCTTGTTTAGCGTTCTCCAGTGCTCTTGCTTTTGACTCTTCATTGTGGAGGTCT GTATATATTTACTTCAAAGGCTCTCAACCTCCCTTTGAACGTTTGAGGAAAAGTAGATCCGAGATCTCAGAGGTGCTCACTCTGTCTCTCATCCTTTTTC TTTCATACACTTGTGCTTGCTCCCTGTCTGGTAAACCAGACTTCATTCTTTGCATTGATTGGGTACCAATATTTCAGTCGTATTTTACTCATTACTTACT GGTTGTTCGGACGTCTTACCGACTCCTTCTTATGGAGCCCGAATACTTCTCTAAGCGATGGGACTGGTTTCGGATACTGGATTTTGTAAAGGAGTCTCAA GGTCTTGGTATGGGCTCAGATATTCGATGGTGTGTGAAGCAGATAGCGCTTCTGTTTGGAATGAACGACAAGATAACTGAAAATGCAGAAGAGGACGCAG CATGTTTGTCGCGGTGGGGGGAGTTATATGCAGATGTCGCAATAGAAAAGGCTGGTTCATATCTTGAATCATCTGGAAATGGCGCTGGCAATGGTTTTAG TGAGGAGAACTGCCTAAAATCCATTACCCGTGGTCCTCAGAATTCATCACAACTCCTGGAACGTGAGCTTGCGTTGAAACGTCGAAGGTTGATCAGAAGT GAATCAGTTGGCTGTCCCTTTGTTGTGACAGAGTTCAGTGTTGCTGTAATGACTTGTGAGTTGACGGGTGTTCTAGCGTCTTTGTTCTCCAAAGGGTTCC GGATGCCTTTAAAGGATGAGGTTGATGATGATGGTGCTTCCAAAGAAGTTAGTGGAACTGGCATGGGGGAAGGAGAAGGACGTAACGATGACAGCGATCA GATAACTGACAAGGACCAATTGCTTGGAGCTTCTGTTAAGGGGGAAGACCAGACCAATGGTGAGGTTCCAAGTAAGACGGAAGAGGATTTTGACGGCTGA
AA sequence Show only first row Show all	>Lus10037616 pacid=23167209 polypeptide=Lus10037616 locus=Lus10037616.g ID=Lus10037616.BGIv1.0 annot-version=v1.0 MPIDGSFLLKSALERFLGRCRELQSIKKFEDLVKKKIIAKVVNLLSQCNLTFSEDIGDSVDAEVFILEHYTRSRKGLYLHELACLAFSSALAFDSSLWRS VYIYFKGSQPPFERLRKSRSEISEVLTLSLILFLSYTCACSLSGKPDFILCIDWVPIFQSYFTHYLLVVRTSYRLLLMEPEYFSKRWDWFRILDFVKESQ GLGMGSDIRWCVKQIALLFGMNDKITENAEEDAACLSRWGELYADVAIEKAGSYLESSGNGAGNGFSEENCLKSITRGPQNSSQLLERELALKRRRLIRS ESVGCPFVVTEFSVAVMTCELTGVLASLFSKGFRMPLKDEVDDDGASKEVSGTGMGEGEGRNDDSDQITDKDQLLGASVKGEDQTNGEVPSKTEEDFDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037616 [exp]	0	1
AT3G10530			Transducin/WD40 repeat-like su...		Lus10024656 [exp]	1.0	0.8871
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10020603 [exp]	2.0	0.8195
AT1G17450			B-block binding subunit of TFI...		Lus10015659 [exp]	3.5	0.8129
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10014317 [exp]	4.2	0.7974
AT2G36110			Polynucleotidyl transferase, r...		Lus10029479 [exp]	5.1	0.7744
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10017011 [exp]	5.7	0.8276
AT1G17450			B-block binding subunit of TFI...		Lus10015660 [exp]	6.3	0.7949
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10007219 [exp]	7.5	0.7922
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10042220 [exp]	10.2	0.8119
AT1G62350			Pentatricopeptide repeat (PPR)...		Lus10000892 [exp]	10.6	0.7883

Compare expression of checked genes

Lus10037616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.