Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13930 712 / 0 Dihydrolipoamide acetyltransferase, long form protein (.1) AT1G54220 711 / 0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G52200 317 / 7e-100 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT1G34430 185 / 9e-52 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT3G06850 150 / 3e-39 DIN3, LTA1, BCE2 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) AT5G55070 121 / 3e-29 Dihydrolipoamide succinyltransferase (.1) AT4G26910 117 / 1e-28 Dihydrolipoamide succinyltransferase (.1.2.3) AT3G25860 72 / 5e-13 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006877 [exp] 858 / 0 AT1G54220 704 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10008412 [exp] 328 / 6e-104 AT3G52200 725 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10001967 [exp] 327 / 1e-103 AT3G52200 717 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10041467 [exp] 173 / 8e-48 AT3G25860 595 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10043117 [exp] 150 / 5e-39 AT4G26910 653 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10037492 [exp] 141 / 8e-36 AT3G06850 565 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Lus10006498 [exp] 136 / 1e-33 AT3G06850 558 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Lus10034304 [exp] 120 / 6e-29 AT3G25860 592 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10043116 [exp] 119 / 2e-28 AT4G26910 638 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G043900 [exp] 742 / 0 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.001G198000 [exp] 741 / 0 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.008G027400 [exp] 334 / 2e-106 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Potri.013G114300 [exp] 210 / 7e-61 AT1G34430 549 / 0.0 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.019G084900 [exp] 197 / 4e-56 AT1G34430 473 / 7e-165 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.008G119500 [exp] 184 / 1e-51 AT3G25860 464 / 5e-161 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.010G126600 [exp] 179 / 2e-49 AT3G25860 470 / 2e-163 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.010G011300 [exp] 146 / 1e-37 AT3G06850 566 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.001G357000 [exp] 129 / 1e-31 AT4G26910 624 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Potri.008G219700 [exp] 125 / 2e-30 AT3G06850 518 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF00198 [flax] [poplar] 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0105 [flax] [poplar] PF02817 [flax] [poplar] E3_binding e3 binding domain
Representative CDS sequence Show only first row Show all	>Lus10037617 pacid=23167191 polypeptide=Lus10037617 locus=Lus10037617.g ID=Lus10037617.BGIv1.0 annot-version=v1.0 ATGTTTCCAGCGTACTGCGATACAGCCATGGCAGCTTGGTTCGTTGGTTTTCGAACGAGGCCATCGGTAAAAGAGAAGTTTTGTTCATTCTCTGTGTCTG TGAGCATTTGTCGCTTCTATGCCTTGCCAGATCGGACTGGTTGCTATTTGTATTCTCTTAGATCATTCGAATTATTAGTGTATTGCTATGCTATATTGTC TTTTTCTACTGGAGATGAAGAAGAAATTGTATGTATGGAGGTGTATGAAGTTCTCCTCTGCGTTGTATGTTCATCCGAGGACGATGTCCTTGAAAATTTG GTATATGTTTACAATTATGGATGGGTGCGAGAGGTTTTGAAGACTGGCAATCATGCATATGTGGGTGCAGAAAAAGGAAGTTTCTCTTGTTCTCTTAATG GCACTGTGTCAGTTTTGGGTAGTCCCAGAAGACATATTTCGACAACGATGATGAGATCAGGAAATCCAATGTTTGCACGAGTATCCAGCTCACAAACACT CTCAAGCCGAGCCTTTTCATCCGACTCAGCTCTCCCTGCACATCAGGAGATTGGAATGCCATCTCTTTCACCAACAATGACAGAGGGGAATATAGCAAGA TGGCTCAAGAAAGAGGGCGACAAAGTCTCACCTGGTGAAGTGCTTTGTGAAGTAGAAACAGATAAAGCAACCGTTGAAATGGAATGCATGGAAGAAGGTT TTCTTGCAAAGATTGTGAAGGGGGATGGAGCAAAAGAAATTCAAGTTGGTGAGATAATTGCAATTACAGTAGAGGATGAGGAAGACATTGCAAAGTTTAA GGATTACAGCCCTTCTGCTTCAGGATCTAGTCCAGAACCACTTAAGGAGGCATCTTCCTCTACTCCACCTCCCCCACCGACAAAGGAGGCTGTGATGGAG CCAGTTAGTTCTCCAGCGCCGGAGGTCTCCAAGCCAACTTCCGCATCTGCTGATGATCGCATTTTCGCTAGCCCTTTGGCAAAGAAATTGGCTGAAGAAC AAAAAGTATCTCTCTCAGAAATCAAAGGAACGGGTCCTGATGGAAGCATAGTGAAGGCAGATATTGATGATTACTTGGCTTCACGTGGTAAGGAAGTTTC TGCAACTGCAACAACGGCAAAGACCAAGGGGCTACCTGATGCTGCTTTGGATTATGTTGACATCCCTCATACTCAAATTAGAAAGGTCACCGCTGCTCGC TTATTACTTTCAAAGCAAACCGTTCCTCACTATTACTTGACTGTGGATACATGTGTTGATAAACTCATGGATTTGCGGAGCAAACTAAATTCCTTGCAAG AGGCCTCAGGTGGGAAGAGGATATCAGTGAATGATCTTGTGATCAAGGCTGTTGCTTTGGCTCTTAAGAAAGTTCCACAATGCAATAGTTCATGGACTGA CAATTATATCCGCCAGTACAAGAATGTAAATATCAATGTAGCGGTGCAAACAGACAATGGTCTTTATGTTCCAGTAATCAGGGATGCTGATAAGAAAGGT TTATCGACAATAGGCGAGGAAGTCAAGCATTTGGCTAAAAAAGCCAGAGACAATAGCTTGAAGCCAGAAGATTACGAGGGAGGAACGTTCACGGTGTCTA ATTTGGGAGGGCCTTTTGCTGTAAAGCAGTTCTGTGCCATCGTGAATCCTCCTCAGGCCGGGATTTTAGCTGTTGGTTCAGCCGAAAAGAGGGTTGTCCC TGGATCCGGCTCCGATGCCTACTCGTTTGCGTCGTTCATGACAGTCACACTAAGCTGCGACCATCGCGTTATCGACGGTGCCATTGGGGCAGAGTGGCTG AAAGCATTCAAGAACTACATCGAGAACCCGGAATCGATGTTGCTGTAA
AA sequence Show only first row Show all	>Lus10037617 pacid=23167191 polypeptide=Lus10037617 locus=Lus10037617.g ID=Lus10037617.BGIv1.0 annot-version=v1.0 MFPAYCDTAMAAWFVGFRTRPSVKEKFCSFSVSVSICRFYALPDRTGCYLYSLRSFELLVYCYAILSFSTGDEEEIVCMEVYEVLLCVVCSSEDDVLENL VYVYNYGWVREVLKTGNHAYVGAEKGSFSCSLNGTVSVLGSPRRHISTTMMRSGNPMFARVSSSQTLSSRAFSSDSALPAHQEIGMPSLSPTMTEGNIAR WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGFLAKIVKGDGAKEIQVGEIIAITVEDEEDIAKFKDYSPSASGSSPEPLKEASSSTPPPPPTKEAVME PVSSPAPEVSKPTSASADDRIFASPLAKKLAEEQKVSLSEIKGTGPDGSIVKADIDDYLASRGKEVSATATTAKTKGLPDAALDYVDIPHTQIRKVTAAR LLLSKQTVPHYYLTVDTCVDKLMDLRSKLNSLQEASGGKRISVNDLVIKAVALALKKVPQCNSSWTDNYIRQYKNVNINVAVQTDNGLYVPVIRDADKKG LSTIGEEVKHLAKKARDNSLKPEDYEGGTFTVSNLGGPFAVKQFCAIVNPPQAGILAVGSAEKRVVPGSGSDAYSFASFMTVTLSCDHRVIDGAIGAEWL KAFKNYIENPESMLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54220			Dihydrolipoamide acetyltransfe...		Lus10037617 [exp]	0	1
AT1G80230			Rubredoxin-like superfamily pr...		Lus10023135 [exp]	1.7	0.8479
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004939 [exp]	2.0	0.8852
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	3.9	0.8996
AT5G65630		GTE7	global transcription factor gr...		Lus10010524 [exp]	7.1	0.8284
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10032377 [exp]	8.1	0.8268
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002939 [exp]	8.9	0.8474
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	11.5	0.8333
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10015440 [exp]	12.0	0.8432
AT3G01810			unknown protein		Lus10022341 [exp]	14.1	0.8288
AT4G30020			PA-domain containing subtilase...		Lus10001310 [exp]	15.9	0.8200

Compare expression of checked genes

Lus10037617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.