Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18110 266 / 2e-90 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) AT1G30230 251 / 2e-84 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1.2) AT5G19510 179 / 3e-56 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) AT5G12110 179 / 3e-56 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013555 [exp] 298 / 3e-103 AT2G18110 313 / 3e-109 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10017261 [exp] 290 / 2e-98 AT2G18110 308 / 3e-105 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10036101 [exp] 157 / 6e-48 AT5G12110 296 / 1e-102 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1) Lus10026784 [exp] 157 / 6e-48 AT5G12110 297 / 6e-103 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G094200 [exp] 263 / 2e-89 AT2G18110 299 / 1e-103 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.012G096400 [exp] 259 / 1e-87 AT2G18110 275 / 4e-94 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.001G224700 [exp] 186 / 5e-59 AT2G18110 153 / 3e-46 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.009G018600 [exp] 158 / 4e-48 AT2G18110 158 / 3e-48 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00736 [flax] [poplar] EF1_GNE EF-1 guanine nucleotide exchange domain
Representative CDS sequence Show only first row Show all	>Lus10037618 pacid=23167242 polypeptide=Lus10037618 locus=Lus10037618.g ID=Lus10037618.BGIv1.0 annot-version=v1.0 ATGTCGATTTCACTCCAAGATCCCAACTCACCAGCTGGCCTGAAGAAGCTCGATGATTACCTTTTCAGTCGCAGTTACATCACTGGGTACCAAGCTTCGA AAGATGACATTACTGTCTTTTCTGCAATCCCTAGTCTCCCACCATCCGATTTGGTGAATGTTTGTAGGTGGTTCAAACACATCGACGCACTTTTGAGGAT TTCGGGTGTTTCTGGTGAAGGATCCGGAGTTACTATTGAGGGATTTGCTCCTGCTGCTGAAGCTGTTGCAACTCCCCCTACTGGTGACTCTAAGGCTGCT GCTGTTGAGGATGACGACGATGATGATGTCGATCTCTTTGGTGAAGAGACCGAAGAGGAAAAGAAGGCAGCAGAAGAGCGTGCAGCTTCTGTTAAGGCTT CTTCCAAGAAGAAGGAATCTGGCAAGTCCTCTGTGTTGATGGATGTTAAGCCATGGGACGACGAGACCGACATGAAGAAGCTCGAGGAAGCAGTCAGGAG TGTCGAGATGGAAGGGCTTTTCTGGGGAGCTTCGAAGCTCGTTGCAGTTGGATACGGTATCAAGAAGCTGCAGATCATGATGACCATTGTGGACGACCTA GTGTCGGTGGACACCCTCATTGAAGAGAGACTGACTGAGGAGCCGATCAACGAGTATGTCCAGAGCTGTGACATTGTGGCCTTCAACAAGATATGGTGA
AA sequence Show only first row Show all	>Lus10037618 pacid=23167242 polypeptide=Lus10037618 locus=Lus10037618.g ID=Lus10037618.BGIv1.0 annot-version=v1.0 MSISLQDPNSPAGLKKLDDYLFSRSYITGYQASKDDITVFSAIPSLPPSDLVNVCRWFKHIDALLRISGVSGEGSGVTIEGFAPAAEAVATPPTGDSKAA AVEDDDDDDVDLFGEETEEEKKAAEERAASVKASSKKKESGKSSVLMDVKPWDDETDMKKLEEAVRSVEMEGLFWGASKLVAVGYGIKKLQIMMTIVDDL VSVDTLIEERLTEEPINEYVQSCDIVAFNKIW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18110			Translation elongation factor...		Lus10037618 [exp]	0	1
AT5G59850			Ribosomal protein S8 family pr...		Lus10040309 [exp]	2.4	0.9421
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10003379 [exp]	4.2	0.9347
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10003844 [exp]	8.9	0.9357
AT1G23280			MAK16 protein-related (.1)		Lus10000846 [exp]	9.4	0.9138
AT4G14320			Zinc-binding ribosomal protein...		Lus10038130 [exp]	10.8	0.9330
AT2G20450			Ribosomal protein L14 (.1)		Lus10008246 [exp]	12.6	0.9159
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10035584 [exp]	15.7	0.9281
AT4G29410			Ribosomal L28e protein family ...		Lus10012914 [exp]	15.8	0.9236
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10022057 [exp]	15.9	0.9278
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10011145 [exp]	16.1	0.8862

Compare expression of checked genes

Lus10037618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.