Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49610 48 / 4e-07 F-box family protein (.1) AT3G57590 44 / 2e-05 F-box and associated interaction domains-containing protein (.1) AT3G57580 42 / 5e-05 F-box and associated interaction domains-containing protein (.1) AT1G33020 41 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT3G17530 40 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT5G15660 40 / 0.0002 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028682 [exp] 96 / 1e-23 AT5G49610 62 / 2e-10 F-box family protein (.1) Lus10000860 [exp] 94 / 3e-23 AT5G49610 52 / 3e-07 F-box family protein (.1) Lus10003922 [exp] 74 / 6e-16 AT3G26010 60 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037467 [exp] 74 / 8e-16 AT3G26010 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10036954 [exp] 70 / 2e-14 ND 48 / 5e-06 Lus10036951 [exp] 62 / 2e-12 ND 44 / 2e-05 Lus10000664 [exp] 49 / 2e-07 AT3G23570 166 / 1e-48 alpha/beta-Hydrolases superfamily protein (.1) Lus10008162 [exp] 47 / 7e-07 AT1G60370 48 / 5e-07 F-box and associated interaction domains-containing protein (.1) Lus10040838 [exp] 46 / 3e-06 AT3G23950 57 / 2e-08 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G149000 [exp] 47 / 7e-07 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.011G121200 [exp] 47 / 7e-07 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G004800 [exp] 44 / 1e-05 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.001G224200 [exp] 42 / 6e-05 AT3G07870 105 / 4e-25 F-box and associated interaction domains-containing protein (.1) Potri.011G137200 [exp] 40 / 0.0002 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 40 / 0.0003 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.001G318400 [exp] 40 / 0.0003 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.009G132400 [exp] 39 / 0.0004 ND / Potri.004G112400 [exp] 39 / 0.0005 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.011G037200 [exp] 39 / 0.0007 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10037619 pacid=23167077 polypeptide=Lus10037619 locus=Lus10037619.g ID=Lus10037619.BGIv1.0 annot-version=v1.0 ATGGAAATCCCTTTCTGTGTCATCATCAATGACGTTTTGCCTCACAATCTACTAGCAGAGATTTTCGTTCGTCTTCATTTGAGAGATGTGTTTCGCTGTA TGGCTGTTTGCAAGCTCTGGTGCTCTCTTATCCGATACGATCCAAGTTTCAAAGTGGAGTTTACCCTCAAGAAAATTGAGGGGGATCAACTACTAATTTC TGCAAAATGCACTGTCAATGAGTTGTTTCTGGTCACTACCACTGGCAATATCTCCAATGGGCTAGCTAGACTTATCTTTGGATTTTCCAACGGCTTGGTA CTGTGCCCCCCAGCGGGAACAACCTTGCGGGCTGCGTACTACGTTTGCAACCCGCTAACGAAGCAGTTTGTCATGCTTCCACCATCTCCTTGGTCTGATT ATCACATGTATACGGGTTTTATCTGTGATGGAGTGCGACTTTGA
AA sequence Show only first row Show all	>Lus10037619 pacid=23167077 polypeptide=Lus10037619 locus=Lus10037619.g ID=Lus10037619.BGIv1.0 annot-version=v1.0 MEIPFCVIINDVLPHNLLAEIFVRLHLRDVFRCMAVCKLWCSLIRYDPSFKVEFTLKKIEGDQLLISAKCTVNELFLVTTTGNISNGLARLIFGFSNGLV LCPPAGTTLRAAYYVCNPLTKQFVMLPPSPWSDYHMYTGFICDGVRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49610			F-box family protein (.1)		Lus10037619 [exp]	0	1
					Lus10024528 [exp]	22.0	0.6079
AT1G27350			Ribosome associated membrane p...		Lus10011355 [exp]	24.4	0.6089
AT2G34930			disease resistance family prot...		Lus10016326 [exp]	24.7	0.5132
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012415 [exp]	41.2	0.5312
AT5G17680			disease resistance protein (TI...		Lus10005588 [exp]	44.0	0.5675
AT2G33710	AP2_ERF		Integrase-type DNA-binding sup...		Lus10016245 [exp]	66.1	0.4647
AT5G05570			transducin family protein / WD...		Lus10030399 [exp]	133.0	0.5095
AT4G15780		ATVAMP724	vesicle-associated membrane pr...		Lus10037511 [exp]	188.2	0.4668
AT1G25275			unknown protein		Lus10004192 [exp]	196.0	0.4644
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10043380 [exp]	249.8	0.4459

Compare expression of checked genes

Lus10037619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.