Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72710 615 / 0 CKL2 casein kinase 1-like protein 2 (.1) AT4G26100 602 / 0 CKL1, CK1 casein kinase 1 (.1) AT5G57015 597 / 0 CKL12 casein kinase I-like 12 (.1) AT2G19470 553 / 0 CKL5 casein kinase I-like 5 (.1) AT1G03930 512 / 1e-180 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G44100 512 / 1e-180 CKL7 casein kinase I-like 7 (.1) AT3G23340 509 / 1e-179 CKL10 casein kinase I-like 10 (.1) AT5G43320 501 / 4e-176 CKL8 casein kinase I-like 8 (.1) AT4G28540 498 / 4e-175 CKL6, PAPK1 casein kinase I-like 6 (.1) AT4G14340 493 / 2e-173 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006879 [exp] 836 / 0 AT1G72710 664 / 0.0 casein kinase 1-like protein 2 (.1) Lus10006018 [exp] 729 / 0 AT1G72710 649 / 0.0 casein kinase 1-like protein 2 (.1) Lus10027628 [exp] 635 / 0 AT4G26100 702 / 0.0 casein kinase 1 (.1) Lus10011940 [exp] 612 / 0 AT4G26100 680 / 0.0 casein kinase 1 (.1) Lus10033913 [exp] 517 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10022029 [exp] 515 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10042570 [exp] 513 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10021175 [exp] 509 / 2e-179 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10014661 [exp] 506 / 2e-178 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197600 [exp] 665 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 655 / 0 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 642 / 0 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 641 / 0 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.002G036000 [exp] 516 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.010G070400 [exp] 514 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.005G226900 [exp] 513 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.008G168100 [exp] 506 / 4e-178 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.013G047200 [exp] 506 / 4e-178 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.018G041000 [exp] 485 / 2e-170 AT4G28880 589 / 0.0 casein kinase I-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10037621 pacid=23167285 polypeptide=Lus10037621 locus=Lus10037621.g ID=Lus10037621.BGIv1.0 annot-version=v1.0 ATGGAGCCTCGCGTCGGTAACAAGTTTCGTCTCGGTCGCAAGATCGGCAGCGGATCATTTGGAGAGATCTATCTCGGTACTAATGTGCAAACAAACGAGG AGGTTGGAATTAAGCTCGAAAATGCGAAGACAAAGCATCCACAGTTGCTGTATGAATCGAAGTTGTATAAACTACTTCAAGGAGGAACTGGAATTCCGAA TGTTAAATGGTTTGGAGTAGACGGGGAGTACAATGTTCTTGTGATGGATTTACTGGGACCCAGTCTTGAAGATCTATTCAACTTTTGTAGCAGAAAAATG TCTCTTAAGACTGTTCTCATGCTTGCTGACCAAATGATTAATCGAGTTGAATTTGTCCACTCCAAATCATTTCTACATCGAGATATCAAACCGGACAACT TTCTTATGGGTTTAGGAAGGCGTGCCAATCAGGTTTACATGATTGACTTTGGGCTGGCTAAGAAGTATAGGGACACATCAACGCATCAACATATTCCTTA CAGGGAGAATAAGAATTTGACGGGAACGGCAAGATATGCAAGCATGAACACCCATCTTGGAATTGAACAAAGCCGGAGGGATGATCTGGAATCTCTTGGA TATGTATTTATGTACTTCCTTCGAGGAAGTCTTCCCTGGCAGGGGCTAAGGGCTGGAACTAAAAAGCAGAAGTATGAAAAGATCAGTGAAAAGAAAGTGT CAACTTCTATCGAGGCTTTATGTCGAGGCTATCCTACAGAATTTGCATCTTACTTTCATTACTGTCGGTCATTGCGTTTTGATGACAAGCCAGATTATGC ATACCTGAAAAGGCTATTCCGTGATCTTTTCATTCGTGAAGGTTTCCAGTTTGACTATGTTTTTGACTGGACGATTCTGAAATATCAGCAGTCGCAGATT TCTAATCCTCCTACTCGTCCTATTGGTGGAGCTGCTGCTGGACCCAGCGCTGGAGCGGCAGCAACGAGTACGAATGCCGATAGACAGCAAGTTGGCAGCG GAGAAGAAGGTAAACCTAGTTGGTCTTCAAGTGATCCGCGAAGAAGAACTTCGGGGCCAATTCTAAATTCCGCTACGCTATCCAAGCTAAAGAATCCTGT TGTCAATGAACCAAAAGATGTTCCGTTACCTGGCCCAAATTACGTACGAACTAGCACATCTACAAGAAGACCTGCCGGACATGAATCAACTCAAGCCGTA CCTTCAGAGCAAAGGCACTCATCTACAGCCAGAAACAGCAACTCCAACACTAAGAACTTAGAATCAACGCTCCGAGGCATCGAGAGCCTCCGGTTCAACA GCGACGAGAGGGTGCTTCACTAG
AA sequence Show only first row Show all	>Lus10037621 pacid=23167285 polypeptide=Lus10037621 locus=Lus10037621.g ID=Lus10037621.BGIv1.0 annot-version=v1.0 MEPRVGNKFRLGRKIGSGSFGEIYLGTNVQTNEEVGIKLENAKTKHPQLLYESKLYKLLQGGTGIPNVKWFGVDGEYNVLVMDLLGPSLEDLFNFCSRKM SLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYMIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLG YVFMYFLRGSLPWQGLRAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQI SNPPTRPIGGAAAGPSAGAAATSTNADRQQVGSGEEGKPSWSSSDPRRRTSGPILNSATLSKLKNPVVNEPKDVPLPGPNYVRTSTSTRRPAGHESTQAV PSEQRHSSTARNSNSNTKNLESTLRGIESLRFNSDERVLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10037621 [exp]	0	1
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006879 [exp]	1.0	0.9612
AT3G48860			unknown protein		Lus10036015 [exp]	1.4	0.9528
AT2G45500			AAA-type ATPase family protein...		Lus10009233 [exp]	2.4	0.9485
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10031382 [exp]	3.0	0.9266
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10013462 [exp]	5.5	0.9416
AT1G54610			Protein kinase superfamily pro...		Lus10004144 [exp]	6.2	0.9129
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10020737 [exp]	6.8	0.9017
AT1G55680			Transducin/WD40 repeat-like su...		Lus10037252 [exp]	7.5	0.9187
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10025696 [exp]	7.5	0.9329
AT5G55060			unknown protein		Lus10021546 [exp]	7.7	0.9204

Compare expression of checked genes

Lus10037621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.