Plant FIBer expression Database

Lus10037623 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32915 112 / 5e-32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006882
[exp]
278 / 3e-97 AT4G32915 111 / 8e-32 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G058200
[exp]
133 / 1e-40 AT4G32915 144 / 8e-45 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02686 Glu-tRNAGln Glu-tRNAGln amidotransferase C subunit
Representative CDS sequence
>Lus10037623 pacid=23167307 polypeptide=Lus10037623 locus=Lus10037623.g ID=Lus10037623.BGIv1.0 annot-version=v1.0
ATGGCGACCGGAGTCGGAGTCGCGCTGCTCGTTCGCCCATTGTCACTGCTCGGAAGAAGGTCTCCATACTTCAACGGCGGCGCATCTCCTTTCTTTCTCG
CCGGAATCAGTTCTTCTTACAGGAAGAAGCGAAACAACAGCGTCGGAAGAAGACTCTTCTCAGCTGAAGCACTAACAAACGGCGAAGCCGCCCCTGACCT
CCGCCGCCTAGCTGAAACCGCTCGAATCTCTCTCACTCAACAAGAGGTGGAAGAGCTTGGCCCCAAAATCCAACAAGTAATCGGATGGTTTGGGCAGCTT
CAAGGTGTGGATCTTAATCGGGTTGAGCCTGGAATCCGAGCAGCAACTGCAGCAGAGGCTGAAGAAGGAGTGAACTTGCGAGACGATGTGCCTTCGACAT
TCCCGAAAACGGATGCTATCATTGAGGGTATTCCGAGCTACGAAGAACCTTATCTCCGAGTTCCAAAGGTCTTGCACAAGGACTGA
AA sequence
>Lus10037623 pacid=23167307 polypeptide=Lus10037623 locus=Lus10037623.g ID=Lus10037623.BGIv1.0 annot-version=v1.0
MATGVGVALLVRPLSLLGRRSPYFNGGASPFFLAGISSSYRKKRNNSVGRRLFSAEALTNGEAAPDLRRLAETARISLTQQEVEELGPKIQQVIGWFGQL
QGVDLNRVEPGIRAATAAEAEEGVNLRDDVPSTFPKTDAIIEGIPSYEEPYLRVPKVLHKD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G32915 unknown protein Lus10037623
[exp]
0 1
AT4G32915 unknown protein Lus10006882
[exp]
10.2 0.7811
AT3G55330 PPL1 PsbP-like protein 1 (.1) Lus10003289
[exp]
11.3 0.8197
AT5G11480 P-loop containing nucleoside t... Lus10011673
[exp]
30.0 0.8030
AT1G74970 TWN3, RPS9 ribosomal protein S9 (.1) Lus10016295
[exp]
31.4 0.8018
AT2G14880 SWIB/MDM2 domain superfamily p... Lus10013893
[exp]
38.6 0.7922
AT2G45250 Integral membrane protein hemo... Lus10003319
[exp]
47.5 0.7707
AT2G45770 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFEC... Lus10041358
[exp]
52.6 0.7876
AT3G15820 ROD1 REDUCED OLEATE DESATURATION 1,... Lus10025747
[exp]
56.0 0.7589
AT5G08340 Nucleotidylyl transferase supe... Lus10007496
[exp]
57.7 0.7335
AT2G32040 Major facilitator superfamily ... Lus10010565
[exp]
85.1 0.7179

Lus10037623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.