Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08520 286 / 4e-100 SNARE-like superfamily protein (.1) AT3G09800 283 / 9e-99 SNARE-like superfamily protein (.1) AT1G60970 280 / 2e-97 SNARE-like superfamily protein (.1) AT2G19790 45 / 5e-06 SNARE-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006883 [exp] 377 / 5e-136 AT4G08520 287 / 3e-100 SNARE-like superfamily protein (.1) Lus10025383 [exp] 236 / 5e-80 AT1G60970 235 / 6e-80 SNARE-like superfamily protein (.1) Lus10015263 [exp] 55 / 1e-10 AT1G60970 55 / 4e-11 SNARE-like superfamily protein (.1) Lus10012924 [exp] 47 / 7e-07 AT2G19790 280 / 6e-99 SNARE-like superfamily protein (.1) Lus10035004 [exp] 43 / 2e-05 AT2G19790 262 / 6e-92 SNARE-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197200 [exp] 325 / 1e-115 AT3G09800 287 / 1e-100 SNARE-like superfamily protein (.1) Potri.003G043200 [exp] 323 / 1e-114 AT1G60970 288 / 4e-101 SNARE-like superfamily protein (.1) Potri.001G352900 [exp] 258 / 7e-89 AT1G60970 278 / 6e-97 SNARE-like superfamily protein (.1) Potri.006G149100 [exp] 42 / 3e-05 AT2G19790 287 / 1e-101 SNARE-like superfamily protein (.1) Potri.007G025400 [exp] 42 / 7e-05 AT3G50860 296 / 1e-104 Clathrin adaptor complex small chain family protein (.1) Potri.001G193100 [exp] 39 / 0.0007 AT1G15370 263 / 7e-92 SNARE-like superfamily protein (.1) Potri.005G122900 [exp] 39 / 0.0008 AT3G50860 286 / 1e-100 Clathrin adaptor complex small chain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF01217 [flax] [poplar] Clat_adaptor_s Clathrin adaptor complex small chain
Representative CDS sequence Show only first row Show all	>Lus10037624 pacid=23167231 polypeptide=Lus10037624 locus=Lus10037624.g ID=Lus10037624.BGIv1.0 annot-version=v1.0 ATGGCGCTTTCATCCTATCGCGATGCTTGTCCTACAGTGAAGAACATTCTATTGCTGGATTCAGAAGGGAAGCGTGTAGCTGTCAAGTACTACTCCGATG ACTGGCCAACTAACAACTCAAAGCTAGCCTTTGAGAAAGCTCTGTTTACCAAAACCATGAAGACTAATGCTCGAACCGAAGCCGAGATCACGATGTTTGA CAACTACATTGTTGTCTATAAGTTCACTCAGGATCTCCACTTCTTTGTAACCGGAGGGGATGACGAGAACGAGCTTATTTTGAATGCGGTGCTTCAAGGT TTCTTTGATTCTGTGGCTCTTCTCCTAAGGAACAGTGTGGATAAAAGAGAGGCACTTGAGAACTTGGATCTCATCTTCCTGTGCCTTGATGAGATCATCG AAAGAGGGATGATCCTGGAAACCGATCCCAACGTCATAGCTGGAAAGGTGGCCATCAACAGCATGGATCCTGCTGCACCATTGTCTGAGCAGACGATCTC GCAAGCATTGGCTACTGCTCGGGAGCATTTGACAAGAACCCTATTCCAGTGA
AA sequence Show only first row Show all	>Lus10037624 pacid=23167231 polypeptide=Lus10037624 locus=Lus10037624.g ID=Lus10037624.BGIv1.0 annot-version=v1.0 MALSSYRDACPTVKNILLLDSEGKRVAVKYYSDDWPTNNSKLAFEKALFTKTMKTNARTEAEITMFDNYIVVYKFTQDLHFFVTGGDDENELILNAVLQG FFDSVALLLRNSVDKREALENLDLIFLCLDEIIERGMILETDPNVIAGKVAINSMDPAAPLSEQTISQALATAREHLTRTLFQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08520			SNARE-like superfamily protein...		Lus10037624 [exp]	0	1
AT4G08520			SNARE-like superfamily protein...		Lus10006883 [exp]	1.0	0.8892
AT1G20540			Transducin/WD40 repeat-like su...		Lus10034576 [exp]	2.0	0.8201
AT1G30630			Coatomer epsilon subunit (.1)		Lus10023385 [exp]	2.0	0.8661
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10019925 [exp]	3.0	0.8580
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	3.5	0.7916
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10016265 [exp]	5.0	0.8181
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10036768 [exp]	5.1	0.7632
AT3G48490			unknown protein		Lus10014788 [exp]	5.4	0.7205
AT5G27930			Protein phosphatase 2C family ...		Lus10015206 [exp]	7.3	0.7773
AT4G01897			unknown protein		Lus10038061 [exp]	8.5	0.7822

Compare expression of checked genes

Lus10037624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.