Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72880 457 / 6e-161 Survival protein SurE-like phosphatase/nucleotidase (.1.2) AT4G14930 191 / 2e-57 Survival protein SurE-like phosphatase/nucleotidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015610 [exp] 659 / 0 AT1G72880 522 / 0.0 Survival protein SurE-like phosphatase/nucleotidase (.1.2) Lus10008390 [exp] 550 / 0 AT1G72880 526 / 0.0 Survival protein SurE-like phosphatase/nucleotidase (.1.2) Lus10004909 [exp] 197 / 3e-60 AT4G14930 387 / 1e-135 Survival protein SurE-like phosphatase/nucleotidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G196800 [exp] 470 / 7e-166 AT1G72880 473 / 3e-167 Survival protein SurE-like phosphatase/nucleotidase (.1.2) Potri.003G041000 [exp] 465 / 7e-164 AT1G72880 480 / 4e-170 Survival protein SurE-like phosphatase/nucleotidase (.1.2) Potri.010G088000 [exp] 200 / 2e-61 AT4G14930 365 / 4e-127 Survival protein SurE-like phosphatase/nucleotidase (.1) Potri.010G088100 [exp] 192 / 3e-58 AT4G14930 355 / 5e-123 Survival protein SurE-like phosphatase/nucleotidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01975 [flax] [poplar] SurE Survival protein SurE
Representative CDS sequence Show only first row Show all	>Lus10037627 pacid=23167000 polypeptide=Lus10037627 locus=Lus10037627.g ID=Lus10037627.BGIv1.0 annot-version=v1.0 ATGGCGTCCGAGAAAAAGGGTTTACCGCCAGGCCTGGTTTCGAATCTGCACGAAGTTCTGAACATGAGAAAGGGTCCTGGAGATGAGCAATCAAACGATC ATGGACCTTCCACTTCGGAGGAGGAGGAAGACGACAAAAGACCAATTGTTCTGGTCACCAATGGCGACGGGATTGATTCCCCTGGCCTTCTCCTTCTCGT CGAAGCTTTGGTTCGTGAAGGACGCTACAACGTCCATGTCTGCGCTCCCCAATTGGACAAATCGGTTTCTGCTCATTCTGTTACGCAAGGAGAAACCATA GCTGCAACTTCTGCTCAAATTGATGGAGCTACAGCATTCGAAATCTCAGGAACGCCAGTGGATTGTGTCTCGTTATCAATGTCTGGAGCACTCTTTTCCT GGTCAAAGCCTCTCCTGGTCATTAGTGGGATTGACAAGGGGTCGAGCTGCGGTCATCATATGTTTTACTCGGGTGTGGTTGCTGGAGCTAGAGAGGCATT ACTTAATGGTGTCCCTTCCCTATCAATCTCTCTTAACTGGAAGAAGGATGAAAGCAAGGAAAGCTATTTCAAGGATGCCGTCGCTGTTTGTTTGCCATTG ATAAATGCTGCGATAAGAGATATCGAGAAGGGAGCTTTCCCCAGCAGCTGCTCTCTGAACATACAAATCCCTGCTTCACCGTCCGCAAACAAAGGTTTCA AACTTACTAAGCAAAGTATGTGGCGGTCTACCCTGAACTGGAATGCTGTTTCCGCAAACCGGCATCCTGCTCCTGGATACATGTCCAATCAACAAAGTCT CGGCCTACAGCTTGCACAGCTCGGTCGAGATGCCTCTGCTGCCGGAGCTGCACGTCGTGTAACCAAACAAGGGACGAACGTGGAGATCGAGTCGGTTGGG GCATCTGGAAAGACCGACTCGAACAAAGTGAAAAAGTACTTCAGACTAGAGTTTATGGAGAAGGAGCAGGAAGACCCCAACGAGGACCTCGATTTCAGAG CGCTTGCAAATGGATTTGTAAGTTCAAATTTCGCTCACTTTTTTAGCGACTGTTACTTCGTAGCTGTTCATGAATCAGAGAGAATGTCTGCACCACTGGT TTCAGTAACACCATTTTCAGTCTCTCCACACCTCGAATCATCCGACATGCTGACATCAGCCTCGGAATGGATCTCCTCTGCACTTCAAGAGAGCCAACAA TAA
AA sequence Show only first row Show all	>Lus10037627 pacid=23167000 polypeptide=Lus10037627 locus=Lus10037627.g ID=Lus10037627.BGIv1.0 annot-version=v1.0 MASEKKGLPPGLVSNLHEVLNMRKGPGDEQSNDHGPSTSEEEEDDKRPIVLVTNGDGIDSPGLLLLVEALVREGRYNVHVCAPQLDKSVSAHSVTQGETI AATSAQIDGATAFEISGTPVDCVSLSMSGALFSWSKPLLVISGIDKGSSCGHHMFYSGVVAGAREALLNGVPSLSISLNWKKDESKESYFKDAVAVCLPL INAAIRDIEKGAFPSSCSLNIQIPASPSANKGFKLTKQSMWRSTLNWNAVSANRHPAPGYMSNQQSLGLQLAQLGRDASAAGAARRVTKQGTNVEIESVG ASGKTDSNKVKKYFRLEFMEKEQEDPNEDLDFRALANGFVSSNFAHFFSDCYFVAVHESERMSAPLVSVTPFSVSPHLESSDMLTSASEWISSALQESQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72880			Survival protein SurE-like pho...		Lus10037627 [exp]	0	1
AT1G72880			Survival protein SurE-like pho...		Lus10015610 [exp]	1.0	0.8208
AT4G10030			alpha/beta-Hydrolases superfam...		Lus10041047 [exp]	2.0	0.7948
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10003195 [exp]	9.2	0.7687
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10021021 [exp]	11.8	0.7650
AT3G26700			Protein kinase superfamily pro...		Lus10002882 [exp]	22.2	0.7071
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10025472 [exp]	24.0	0.7415
AT5G19050			alpha/beta-Hydrolases superfam...		Lus10004426 [exp]	30.6	0.6698
AT5G19690		STT3A	staurosporin and temperature s...		Lus10043241 [exp]	32.5	0.6829
AT3G52740			unknown protein		Lus10022717 [exp]	35.0	0.7170
AT1G78060			Glycosyl hydrolase family prot...		Lus10022374 [exp]	37.1	0.7540

Compare expression of checked genes

Lus10037627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.