Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13780 154 / 4e-45 SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015611 [exp] 333 / 3e-115 AT3G13780 176 / 1e-53 SMAD/FHA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G196700 [exp] 145 / 1e-41 AT3G13780 144 / 2e-41 SMAD/FHA domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037628 pacid=23167274 polypeptide=Lus10037628 locus=Lus10037628.g ID=Lus10037628.BGIv1.0 annot-version=v1.0 ATGGAGATTGAAGGAGACGACGGATCGAAGACCGAACTCCACTCCCCCTCCCAGTCAATCTTCGGAAGAGGCTCAGGTTTCACTACGGACGACGTCACAG TCTCCCGCCGCCACCTTCTACTCCGCCTCGAAGGCGCGAACAATAAAGAGCAGCCGCCTAGGGTTTCGTTCGAGGTCATCGGGACAAATCCCGCCTGGGT GAGAACCGGCGGAGAGGTGAAGACCTTCAAGAAGTCCGATAAAGGAGAGCTACGCAATGGAGACAGCTTCTGCATTTCGAGCCGGCCTCCCGTTTGGTTC CGCTTGACGAAGACTATGGTCCCGCAATCGGAAGCTGAAGTGGATAACGTCGACGCTTCACAGATTGATCCTGTTAAAGAGTTTGGGTTTGTGGTGATTG GGCGAGAGTTCGAGGGGTATTCGAAGGGGAGGGTTAGAGATGCTAAGGAGTGGGATTGGTTCTTGAAGGATGCAGCAGAGGATGAAGATGAAGAGGGAAG CAGCCATGGCGGCCTGAGGAGGAGGAAGAAGAGGAAGGGGAGAAGGGATGAGGAGGAAGATGAAGATTGGAGTGATGAAATGGAGGAAGAGAAGGAGATT GAGGTGAATGCGAAGAGGAAGTCGAAGGAAGGAGGAACCACGTATGTGACGAGATCGAAGCAGGTTAAGAGGGAGAAGAAGGGGAACAAGAAGGAGGAGA AAGAGGAGGATGAAGATGAAGATGATGAGACATTGGGAGGGTTTATTGTTGATGAGGAAGAATTGGATGAAGAAGAAGAAGAAGAGGAGGAGGACGAAGA GGAGTTGATGGATGATGATGAAGAAGAAGATGGTGACGTTTGA
AA sequence Show only first row Show all	>Lus10037628 pacid=23167274 polypeptide=Lus10037628 locus=Lus10037628.g ID=Lus10037628.BGIv1.0 annot-version=v1.0 MEIEGDDGSKTELHSPSQSIFGRGSGFTTDDVTVSRRHLLLRLEGANNKEQPPRVSFEVIGTNPAWVRTGGEVKTFKKSDKGELRNGDSFCISSRPPVWF RLTKTMVPQSEAEVDNVDASQIDPVKEFGFVVIGREFEGYSKGRVRDAKEWDWFLKDAAEDEDEEGSSHGGLRRRKKRKGRRDEEEDEDWSDEMEEEKEI EVNAKRKSKEGGTTYVTRSKQVKREKKGNKKEEKEEDEDEDDETLGGFIVDEEELDEEEEEEEEDEEELMDDDEEEDGDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13780			SMAD/FHA domain-containing pro...		Lus10037628 [exp]	0	1
AT5G13340			unknown protein		Lus10035960 [exp]	1.7	0.9027
AT3G49601			unknown protein		Lus10000736 [exp]	2.2	0.8796
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10023712 [exp]	3.2	0.8973
AT3G13780			SMAD/FHA domain-containing pro...		Lus10015611 [exp]	5.2	0.8625
AT1G11240			unknown protein		Lus10011247 [exp]	5.2	0.8972
AT2G44430			DNA-binding bromodomain-contai...		Lus10021861 [exp]	8.5	0.8234
AT5G45190			Cyclin family protein (.1.2)		Lus10036192 [exp]	9.4	0.8640
AT2G44430			DNA-binding bromodomain-contai...		Lus10010335 [exp]	9.5	0.8187
AT5G53800			unknown protein		Lus10003591 [exp]	10.4	0.8856
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	13.3	0.8452

Compare expression of checked genes

Lus10037628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.