Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17650 485 / 1e-173 GR2, GLYR2 glyoxylate reductase 2 (.1) AT3G25530 328 / 1e-112 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT4G29120 148 / 5e-42 6-phosphogluconate dehydrogenase family protein (.1) AT4G20930 129 / 2e-34 6-phosphogluconate dehydrogenase family protein (.1) AT1G71170 108 / 2e-27 6-phosphogluconate dehydrogenase family protein (.1) AT1G71180 97 / 9e-23 6-phosphogluconate dehydrogenase family protein (.1) AT1G18270 90 / 2e-19 ketose-bisphosphate aldolase class-II family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015612 [exp] 631 / 0 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10012301 [exp] 288 / 3e-97 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10016077 [exp] 271 / 1e-85 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1) Lus10001349 [exp] 147 / 1e-41 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10023258 [exp] 125 / 4e-33 AT4G20930 479 / 4e-171 6-phosphogluconate dehydrogenase family protein (.1) Lus10012950 [exp] 122 / 3e-32 AT4G29120 456 / 3e-163 6-phosphogluconate dehydrogenase family protein (.1) Lus10038545 [exp] 95 / 5e-22 AT4G20930 451 / 3e-160 6-phosphogluconate dehydrogenase family protein (.1) Lus10002140 [exp] 83 / 2e-17 AT1G18270 1147 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Lus10034974 [exp] 75 / 5e-16 AT4G29120 201 / 1e-64 6-phosphogluconate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G040800 [exp] 521 / 0 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1) Potri.014G197900 [exp] 325 / 2e-111 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.003G038450 [exp] 227 / 1e-74 AT1G17650 217 / 8e-71 glyoxylate reductase 2 (.1) Potri.003G036600 [exp] 150 / 9e-46 AT1G17650 158 / 5e-49 glyoxylate reductase 2 (.1) Potri.018G088000 [exp] 150 / 1e-42 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.001G211500 [exp] 139 / 1e-38 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.001G465600 [exp] 108 / 5e-27 AT4G20930 507 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.015G037000 [exp] 89 / 2e-19 AT1G18270 1931 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03446 [flax] [poplar] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10037629 pacid=23167235 polypeptide=Lus10037629 locus=Lus10037629.g ID=Lus10037629.BGIv1.0 annot-version=v1.0 ATGGCTATCTGCAGCAGCGGCCTTTTCTCCTCTCAGAGACCCATTTCTGCATTTCCACCTAAGCGCCTCTGTTCTTGTTCCACTGCTTTCTCTGCTCAAG CTTCCATCAAAGATGGTTCATCAACTAGTGTTGGATTTCTGGGTCTTGGAATCATGGGCGCTCCCATGGCGCAAAATCTCTTGAAAGCCGGATGTGATGT GACTGTGTGGAACAGAACTGAGAGCAAATGTGAGCCTCTGATCAGCTTAGGTGCAAAATATAAACCTTCTCCAGAGGAAGTTGCTGCTGCTTGTGATGTT ACATTCGCGATGCTTTCGGATCCTGAAAGTGCGATGGAGGTAGCCTGCGGAAAGCATGGAGCAGCAAGTGGTATGGCTCCGGGAAAAGGCTACGTCGACG TTTCGACTGTCGATGGAGGGACTTCCAAGTTGATTAACCAACGCATCAAGTGTACTGGGGCATCATTTCTGGAGGCTCCTGTTTCCGGCTCTAAAAAGCC TGCAGAAGATGGCCAACTGATATTCCTCACTGCAGGTGACAAGCCTCTCTACGACTTGGCCTCTCCTTTCCTCGACATCATGGGGAAGTCTAGATTCTAC CTTGGTGATGTTGGCAATGGAGCTGCTATGAAGCTTGTAGTCAATATGATGATGGGAAGTATGATGGCTAGTTTGGCCGAAGGGTTGATGCTGAGCGAGA AAGTAAGGCTGGACCCCAATGTGCTAGTGGAGGTACTCTCACAGGGAGCCATAAGTGCTCCAATGTACTCCATGAAAGGACCTTCCATGATCAAATCTGC TTACCCTACAGCTTTCCCTCTCAAACACCAACAGAAGGACATGAGGCTTGCTCTTGGACTAGCCGAATCAGTTTCGCAGGCAACACCAGTTGCAGCTGCT GCAAATGAGATGTACAAAGTTGCCAAAAGCCAGGGCCTTGGTGATGCTGATTTCTCCGCTGTCATTGAATCACTGAAAACCAAATTTTAA
AA sequence Show only first row Show all	>Lus10037629 pacid=23167235 polypeptide=Lus10037629 locus=Lus10037629.g ID=Lus10037629.BGIv1.0 annot-version=v1.0 MAICSSGLFSSQRPISAFPPKRLCSCSTAFSAQASIKDGSSTSVGFLGLGIMGAPMAQNLLKAGCDVTVWNRTESKCEPLISLGAKYKPSPEEVAAACDV TFAMLSDPESAMEVACGKHGAASGMAPGKGYVDVSTVDGGTSKLINQRIKCTGASFLEAPVSGSKKPAEDGQLIFLTAGDKPLYDLASPFLDIMGKSRFY LGDVGNGAAMKLVVNMMMGSMMASLAEGLMLSEKVRLDPNVLVEVLSQGAISAPMYSMKGPSMIKSAYPTAFPLKHQQKDMRLALGLAESVSQATPVAAA ANEMYKVAKSQGLGDADFSAVIESLKTKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10037629 [exp]	0	1
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10013854 [exp]	2.0	0.9746
AT5G54600			Translation protein SH3-like f...		Lus10005180 [exp]	3.0	0.9773
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Lus10043055 [exp]	5.7	0.9731
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10029120 [exp]	6.5	0.9732
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10016811 [exp]	7.1	0.9634
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10013041 [exp]	7.5	0.9685
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	7.7	0.9722
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10041553 [exp]	9.2	0.9692
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10001861 [exp]	11.0	0.9669
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10038404 [exp]	13.3	0.9609

Compare expression of checked genes

Lus10037629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.