Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13790 632 / 0 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT1G55120 619 / 0 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G13784 590 / 0 ATCWINV5 cell wall invertase 5 (.1) AT3G52600 531 / 0 ATCWINV2 cell wall invertase 2 (.1.2) AT2G36190 523 / 0 ATCWINV4 cell wall invertase 4 (.1) AT5G11920 484 / 3e-166 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT1G62660 427 / 2e-142 Glycosyl hydrolases family 32 protein (.1) AT1G12240 424 / 4e-141 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015613 [exp] 1146 / 0 AT3G13790 641 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015614 [exp] 788 / 0 AT3G13790 658 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037632 [exp] 769 / 0 AT3G13790 648 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10008392 [exp] 651 / 0 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037633 [exp] 618 / 0 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10017015 [exp] 535 / 0 AT2G36190 683 / 0.0 cell wall invertase 4 (.1) Lus10001529 [exp] 533 / 0 AT3G13790 598 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10014219 [exp] 521 / 7e-180 AT2G36190 711 / 0.0 cell wall invertase 4 (.1) Lus10014217 [exp] 517 / 4e-178 AT2G36190 688 / 0.0 cell wall invertase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G227400 [exp] 589 / 0 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227500 [exp] 568 / 0 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G210600 [exp] 545 / 0 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077400 [exp] 540 / 0 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 535 / 0 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2) Potri.003G112600 [exp] 432 / 2e-144 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 424 / 2e-141 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 413 / 3e-137 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08244 [flax] [poplar] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal CL0143 [flax] [poplar] B_Fructosidase PF00251 [flax] [poplar] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037631 pacid=23167069 polypeptide=Lus10037631 locus=Lus10037631.g ID=Lus10037631.BGIv1.0 annot-version=v1.0 ATGGCGCTAATCGACACTTTTTTAGCTCAAAGTCTCATCTCGTTCACATTCGCTCTAATTTCGGTCAATCTCGTTGATGCTACACACCATCACGAGCCTC TAAAGAAGTATGATCATCATCAACCTTATAGAACTGCCTTCCACTTCCAGCCTCGTAGAAACTGGATCAATGGACCAATGGTGCACAAAGGCGTATACCA TCTATTCTACCAATACAACCCCAATGGCTCAGTATGGGACACCCACATCTCATGGGGACATGCAACATCCAAAGACCTAATCAACTGGTCAATCCAACCA AATGCAATATCCCCATCTGACCCTTCAACAGACATCAATGGTGCCTGGTCTGGCTCAGCCACAATGCTCCCCGGTTCCCAACCGGTCATCTTCTATACCG GAATCGACTCGACCAACCAACAAGTCCAAAACCTAGCATCCCCCAAGGACCCTTCCGACCCGTACCTCGTTGAGTGGACCAAATCGTTTCGAAACCCTAC TTTGTACACTACGCCACGTAACCATATCAACGGCAGCTCCTTCAGGGACCCTTCGACTGCATGGTTCGGCCCTGACCACAGGTGGAGACTCGTCGTTGGA AGCCAGGTTGGCACGCGAGGTGTAGCGGTACTATACAAGAGTTTGGACTTTGTGCACTGGGTCAAGTCCAAGAAGCCGATTCATTCGGCTAGAGGGAACG GAATGTGGGAGTGTCCCGATGTCTATCCGGTCTCCATAGGTGGTAAGGACAGCATAGACACGTCGAAAAGCATCGAAGGAAGCAACCTTAAGTTCGTGTT GAAGGTGAGCTTGTTTGACATAGGGCGCGATTACTACATGATTGGGAACTATAGCTTCGAACAGGACGTGTTCAAACCGGATAACGGGACAATCCGAAAT GGGTTTTCGGGTCTCAGATACGATTACGGAAAATTCTATGCTTCGAAATCATTCTACGATGAGACAAAGAACCGCCGGGTTTTGTGGGGTTGGGTCAATG AGTCCTCAAGAGTTGAGGATGATGTCAAGAAGGGCTGGGCTGGTATTATGGCTATTCCAAGGAGGTTATGGTTGGATCCATCAGGAAAACAACTTCACAT CCAACCGATTGAAGAGACCAAAAAACTCCGGGTCAAACCGGTTCGTTTGCCTAAGCAAATGCTACACGGATCGTCACTGGTTCGAGTCCCTAATGTAACG GCATCCCAAGCGGATGTGGAGATCACATTCGAGGGGCTCGATTTGAGCAAGGCAGAAGTGATGGATCCAAGCTGGATAAGCAAACCACAAGTGGTATGCA CTGAGAAAGGAACATCAGTTAGAGGAAGCTTAGGGCCATTTGGGTTGAAGGTTTTGGCTTCAAAGGGTCTCAAAGAGTTCACCTCAGTGTTCTTCAGGGT CTTCAAGAACCCTCAAAATGGCAAGTTCATGGTGCTCATGTGCTCCGATCAAGCCAAGTCTTCTCTGCGTAAAGATATTGACAAAGCATCGTTTGGTACC TTTGTGAATGTGAATCCAGTTCATCACAATTTGCCTCTAAGAGTGCTGATTGATCACTCGATAGTGGAGAGTTTCGGCGGGAATGGGAAGAGCTGCATAA CTGCAAGAGTTTACCCGAAGCTGGCCGTAAACGTAGCTGCTCGTCTATATGCTTTCAACTACGGAACTGAGAGTGTGAGGATCTCAAGGCTTAGGGCATG GAGCATGAGAAATGCCAGAATCCACCCTGGGAAATGGCACTGGCTTGGCAATAATGACAATTAG
AA sequence Show only first row Show all	>Lus10037631 pacid=23167069 polypeptide=Lus10037631 locus=Lus10037631.g ID=Lus10037631.BGIv1.0 annot-version=v1.0 MALIDTFLAQSLISFTFALISVNLVDATHHHEPLKKYDHHQPYRTAFHFQPRRNWINGPMVHKGVYHLFYQYNPNGSVWDTHISWGHATSKDLINWSIQP NAISPSDPSTDINGAWSGSATMLPGSQPVIFYTGIDSTNQQVQNLASPKDPSDPYLVEWTKSFRNPTLYTTPRNHINGSSFRDPSTAWFGPDHRWRLVVG SQVGTRGVAVLYKSLDFVHWVKSKKPIHSARGNGMWECPDVYPVSIGGKDSIDTSKSIEGSNLKFVLKVSLFDIGRDYYMIGNYSFEQDVFKPDNGTIRN GFSGLRYDYGKFYASKSFYDETKNRRVLWGWVNESSRVEDDVKKGWAGIMAIPRRLWLDPSGKQLHIQPIEETKKLRVKPVRLPKQMLHGSSLVRVPNVT ASQADVEITFEGLDLSKAEVMDPSWISKPQVVCTEKGTSVRGSLGPFGLKVLASKGLKEFTSVFFRVFKNPQNGKFMVLMCSDQAKSSLRKDIDKASFGT FVNVNPVHHNLPLRVLIDHSIVESFGGNGKSCITARVYPKLAVNVAARLYAFNYGTESVRISRLRAWSMRNARIHPGKWHWLGNNDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10037631 [exp]	0	1
					Lus10035428 [exp]	5.6	0.6485
AT2G26480		UGT76D1	UDP-glucosyl transferase 76D1 ...		Lus10017203 [exp]	10.5	0.6012
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014403 [exp]	15.0	0.5969
					Lus10029489 [exp]	17.3	0.5815
AT4G21020			Late embryogenesis abundant pr...		Lus10014004 [exp]	18.7	0.5780
AT4G16260			Glycosyl hydrolase superfamily...		Lus10039233 [exp]	20.6	0.5697
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10014900 [exp]	32.0	0.5354
AT5G03840		TFL-1, TFL1	TERMINAL FLOWER 1, PEBP (phosp...		Lus10017052 [exp]	32.9	0.5858
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042691 [exp]	36.4	0.5001
AT5G53820			Late embryogenesis abundant pr...		Lus10007566 [exp]	40.3	0.5119

Compare expression of checked genes

Lus10037631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.