Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT3G13790	648 / 0	ATCWINV1, ATBFRUCT1	ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
AT1G55120	612 / 0	ATFRUCT5, ATCWINV3	6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3)
AT3G13784	595 / 0	ATCWINV5	cell wall invertase 5 (.1)
AT3G52600	546 / 0	ATCWINV2	cell wall invertase 2 (.1.2)
AT2G36190	537 / 0	ATCWINV4	cell wall invertase 4 (.1)
AT5G11920	461 / 8e-157	ATCWINV6	6-&1-fructan exohydrolase (.1.2)
AT1G62660	432 / 6e-144		Glycosyl hydrolases family 32 protein (.1)
AT1G12240	423 / 2e-140	ATBETAFRUCT4, VAC-INV	VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10015614 [exp]	1117 / 0	AT3G13790	658 / 0.0	ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Lus10015613 [exp]	778 / 0	AT3G13790	641 / 0.0	ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Lus10037631 [exp]	769 / 0	AT3G13790	633 / 0.0	ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Lus10008392 [exp]	679 / 0	AT3G13790	756 / 0.0	ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Lus10037633 [exp]	635 / 0	AT3G13790	704 / 0.0	ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Lus10014217 [exp]	555 / 0	AT2G36190	688 / 0.0	cell wall invertase 4 (.1)
Lus10017015 [exp]	552 / 0	AT2G36190	683 / 0.0	cell wall invertase 4 (.1)
Lus10014219 [exp]	551 / 0	AT2G36190	711 / 0.0	cell wall invertase 4 (.1)
Lus10021339 [exp]	536 / 0	AT2G36190	691 / 0.0	cell wall invertase 4 (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.006G227400 [exp]	597 / 0	AT3G13790	703 / 0.0	ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Potri.006G210600 [exp]	582 / 0	AT3G52600	770 / 0.0	cell wall invertase 2 (.1.2)
Potri.016G077500 [exp]	576 / 0	AT3G52600	751 / 0.0	cell wall invertase 2 (.1.2)
Potri.016G077400 [exp]	575 / 0	AT3G52600	755 / 0.0	cell wall invertase 2 (.1.2)
Potri.006G227500 [exp]	550 / 0	AT3G13790	660 / 0.0	ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Potri.003G112600 [exp]	438 / 2e-146	AT1G12240	882 / 0.0	VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1)
Potri.015G127100 [exp]	426 / 8e-142	AT1G62660	712 / 0.0	Glycosyl hydrolases family 32 protein (.1)
Potri.003G126300 [exp]	425 / 2e-141	AT1G12240	819 / 0.0	VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0004 [flax] [poplar]	Concanavalin	PF08244 [flax] [poplar]	Glyco_hydro_32C	Glycosyl hydrolases family 32 C terminal
CL0143 [flax] [poplar]	B_Fructosidase	PF00251 [flax] [poplar]	Glyco_hydro_32N	Glycosyl hydrolases family 32 N-terminal domain

Representative CDS sequence

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>Lus10037632 pacid=23167085 polypeptide=Lus10037632 locus=Lus10037632.g ID=Lus10037632.BGIv1.0 annot-version=v1.0

ATGGCAGGCATATGTTCGAAGTTGATCTTTGTGTCGTGTGTTCTCTTCGTGATTTGTGGAGTACTTTCAGTGGTGAAAGCTTCACATGATGTTTACACGG

ATTATCAAACCCTCGAAACCTCTCCTCCGAAAGACCAACCCTACCGGACTGGCTTCCATTTTCAGCCTCCTCGCAACTGGATCAACGGACCAATGGTGCA

CAAAGGAATTTACCACTTATTCTACCAATATAACCCAAACGGTTCGGTTTGGGGAAACATCGTGTGGGCCCATGCAACATCCAAAGATCTGGTCAACTGG

AAGCTCCAACCGGTTGCTATCACCCCAACCGAACCGAATTCGGACATTAACGGGGCTTGGTCCGGTTCAGCCACGATACTCCCGAATGGTGAACCGGTCA

TACTATATACCGGAGTCAACTCTCAGAACCAACAAGTACAAAACATAGCCTACCCCAAAAACCTGTCCGACCCGTATCTGATCGAGTGGACCAAACCGGC

CCATAACCCAATAATGTCGCCCACCCCCAGCAATCAAATCAATGCCAGCTCGTTTCGAGACCCTTCCACCGCTTGGTTAGGACCCGACGACACTTGGAGG

CTAGTAACGGGGAGCAAATTCGAGACGACAGGGGTTGCGATCCTATACAAGAGCAAAGATTTCAGGCATTGGGCTCGCGTTACGAAACCCGACGACACTT

GGAGGCTAGTAACGGGGAGCAAATTCGAGACGACAGGGGTTGCGATCCTATACAAGAGCAAAGATTTCAGGCATTGGGCTCGCGTTACGAAACCTTTGCA

CTCGGCTCGAGGGAATGGGATGTGGGAGTGCCCTGCTCTCTACCCGGTCTCGATTGGGAACCGGGATAGTATCGACACATCGAAAAGTAGTGATGGGTTG

AACGTTAAGTACGTACTTAAAGTTAGCTTGGACGACATTAAACATGACTACTACACGATTGGCGACTATAATTATAGCACCGATACCTACAAACCAATCA

ATGGTTCAATTGAGAACGGGTTTTCGGGGTTGAGGTACGACTATGGCAAGTTGTACGCTTCAAAATCGTTCTACGATGGGCAGATGAACCGCAGGGTTTT

GTGGGGTTGGGTGAACGAGTCATCGCCGGTGGAGGCCGATATCAAGAAGGGCTGGTCTGGAGTTATGGCGGTTCCGAGAAGAGTGTGGTTGGACCAGTCT

GGGAAGCAACTCCACATCCGGCCGGTCCAAGAATTGAGCTATCTACGAGTAAATCCAGTCACCTTCAATGATCATCTTCTCCAACCATCTTCCTTTCTTC

AAATCAACAATGTCACAGCAGCTCAGGCAGATGTGGAGATCACATTTGAAGGGTTAGATCTAAGCAAAGCAGAGTCCATGGACCCAATCTGGATACCCAA

ACCACAAATGCTATGTAACCAAAAGGGTGCATCAACAAGAGGAAGCTTAGGGCCATTTGGTTTGAAAGTTTTGGCTTCGAACAATTTTGAGGAGTTCACT

TCTGTGTTCTTCAGGGTCTTCAAGGTTACCCAAACCGATAAACATATGGTTCTCATGTGTAGCGACCAAACCAGGTCTTCACTGGATGACGGTGTTGATA

AATCAAACTATGGTGCTTTTGTGGATGTGAACCTGTCTCATGAGAAGTTGTCGTTGAGAACTTTGATTGACCATTCAATAGTGGAGAGCTTTGCAGTGAG

AGGGAGAAGTTGCATAACAGCAAGAGTTTACCCAAAATTGGCCATAAACAAAGATGCCCATTTGTATGCTTTCAACGGTGGATCTCAAGCCGTTAAGATC

TCCCAATTGAGTGCTTGGAGCATGAAGAGTGCTCGAATCATCGGATGCTAA

AA sequence

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>Lus10037632 pacid=23167085 polypeptide=Lus10037632 locus=Lus10037632.g ID=Lus10037632.BGIv1.0 annot-version=v1.0

MAGICSKLIFVSCVLFVICGVLSVVKASHDVYTDYQTLETSPPKDQPYRTGFHFQPPRNWINGPMVHKGIYHLFYQYNPNGSVWGNIVWAHATSKDLVNW

KLQPVAITPTEPNSDINGAWSGSATILPNGEPVILYTGVNSQNQQVQNIAYPKNLSDPYLIEWTKPAHNPIMSPTPSNQINASSFRDPSTAWLGPDDTWR

LVTGSKFETTGVAILYKSKDFRHWARVTKPDDTWRLVTGSKFETTGVAILYKSKDFRHWARVTKPLHSARGNGMWECPALYPVSIGNRDSIDTSKSSDGL

NVKYVLKVSLDDIKHDYYTIGDYNYSTDTYKPINGSIENGFSGLRYDYGKLYASKSFYDGQMNRRVLWGWVNESSPVEADIKKGWSGVMAVPRRVWLDQS

GKQLHIRPVQELSYLRVNPVTFNDHLLQPSSFLQINNVTAAQADVEITFEGLDLSKAESMDPIWIPKPQMLCNQKGASTRGSLGPFGLKVLASNNFEEFT

SVFFRVFKVTQTDKHMVLMCSDQTRSSLDDGVDKSNYGAFVDVNLSHEKLSLRTLIDHSIVESFAVRGRSCITARVYPKLAINKDAHLYAFNGGSQAVKI

SQLSAWSMKSARIIGC

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10037632 [exp]	0	1

Lus10037632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10037632 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10037632 coexpression network