Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72990 883 / 0 BGAL17 beta-galactosidase 17 (.1.2) AT4G36360 166 / 7e-43 BGAL3 beta-galactosidase 3 (.1.2) AT3G52840 163 / 4e-42 BGAL2 beta-galactosidase 2 (.1) AT3G13750 162 / 1e-41 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G26140 156 / 4e-40 BGAL12 beta-galactosidase 12 (.1.2) AT2G28470 157 / 7e-40 BGAL8 beta-galactosidase 8 (.1.2) AT1G45130 155 / 2e-39 BGAL5 beta-galactosidase 5 (.1) AT5G20710 152 / 3e-38 BGAL7 beta-galactosidase 7 (.1) AT5G56870 150 / 8e-38 BGAL4 beta-galactosidase 4 (.1) AT1G31740 149 / 3e-37 BGAL15 beta-galactosidase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015616 [exp] 1189 / 0 AT1G72990 870 / 0.0 beta-galactosidase 17 (.1.2) Lus10015625 [exp] 168 / 3e-43 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 166 / 2e-42 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10024292 [exp] 162 / 1e-41 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1) Lus10000701 [exp] 160 / 1e-40 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10006009 [exp] 159 / 1e-40 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10000803 [exp] 158 / 2e-40 AT1G45130 1050 / 0.0 beta-galactosidase 5 (.1) Lus10025980 [exp] 158 / 4e-40 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10040557 [exp] 157 / 5e-40 AT4G26140 1001 / 0.0 beta-galactosidase 12 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G037000 [exp] 947 / 0 AT1G72990 922 / 0.0 beta-galactosidase 17 (.1.2) Potri.004G159800 [exp] 163 / 4e-42 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 163 / 7e-42 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 162 / 1e-41 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 160 / 5e-41 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 159 / 2e-40 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.006G144500 [exp] 158 / 3e-40 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G139100 [exp] 154 / 5e-39 AT5G20710 907 / 0.0 beta-galactosidase 7 (.1) Potri.001G025701 [exp] 151 / 6e-38 AT5G20710 1123 / 0.0 beta-galactosidase 7 (.1) Potri.001G025800 [exp] 150 / 9e-38 AT5G20710 1097 / 0.0 beta-galactosidase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10037634 pacid=23167111 polypeptide=Lus10037634 locus=Lus10037634.g ID=Lus10037634.BGIv1.0 annot-version=v1.0 ATGGCGAGAAGGAGAAGAGGAATAACCCATATAGCTCTACTCTTTCTTCTTCTCCTAGCTCTCGCTCTGCTCTGTGCCTTCATCCCCGTTTTCGCTCTGC TCCCTTCAATCTCCCTCGCTGCCACCACTTCTCCTCGCCAAAGGGGCGATGCTCGAACATTCGAGATAGCTGATGACAAGTTCTGGAAAGATGGACATCC GTATCGGATCATTGGTGGCGACTTGCATTACTTCCGTACCCTCCCCGAGTGCTGGGAAGATAGGCTGTTGAAGGCGAAGGCATTGGGGTTGAACACCATC CAAACATATGTTCCGTGGAATCTTCATGAGCCACAACCGGGAAAGCTGAGTTTTGAAGGCATCGCCGATCTGGTATCTTTCCTCAGATTGTGTCACAAGT TGGACTTACTTGTTATGCTTCGAGCTGGTCCTTATGTATGCGGAGAATGGGACTTGGGAGGTTTCCCTGCTTGGTTATTAGCTACTGAGCCGCCTCTCAA GCTCAGATCATCCGACCGGAATTATCTTCAGTTGGTTGACAGATGGTGGGGAACCCTTCTTCCAAAGATAGAACCTTTGCTTTATAACAATGGCGGTCCG ATTATTATGGTTCAGATAGAAAACGAATTTGGTTCATACGGAGATGATCAAACCTATCTTCGCCATTTAGTCCGATTGGCCCGGAGACATCTTGGAGATG GCATAATCTTGTATACTACTGATGGAGGTGCTAGAGAGAATCTCGAACGAGGAACAATTCGTGGAGATTCAGTTTTCTCAGCTGTTGACTTCACCACTGG CGATGATCCATGGCCAATATTCAAGTTGCAGAAAGAGTTTAATGCAGCAGGAAAATCACCACCACTCTCCACTGAATTCTATACAGGCTGGCTAACACAT TGGGGCGAAAAGATTGCGACGACTGATGCTGATTTCACAGCGTCATCTCTGGAGAAGATATTATCACTCAATGGTTCTGCCGTTCTTTATATGGCTCATG GTGGAACGAACTTCGGATTCTATAACGGAGCAAATACCGGCACTGATGAGTCCGATTACAAGCCCGATCTAACTTCCTATGATTATGATGCACCCATCAG TGAATCTGGGGACGTTGACGGCTCAAAGTTTAGCGCATTGAGGGAGGTCATAGGGCGTTATAGTGAGACGTCTCTTCCTCCGCTTCCTGCCAATACTGTT AAGCGAGGATATGGATTGATTGAGTTACGCAAAACCAGTTCGCTGTTTCATTTACTTGATCTAGCAAAGCCTGGAAATGGAGATGGAGTTGAATCCGAAA ACCCATTATCGATGGAGTCATTGGGACAGATGTTTGGTTTCATGCTATACGTGACTAACTACTCAGCGAAGGACATCGGAAATTCCCTGTCCATACCAGT GGTTCATGACAGAGCTCAAGTGTTTACGTCGTGCACTTCTGGAAATAACCGGAGACCAAAGTATATTGGTACGATCGAGAGGTGGTCAAATAAGCAACTT GGTCTTCCTAATGCTAAATGCACCTCCAACACAAGCTTATTCATCTTGGTCGAGAATTTGGGCCGGATAAACTATGGGAAGTACATGTTCGACAGAAAGG GAATTCTTCATTCTGTGTATCTGGATGGCAAGGTTCTGAATGGATGGAGAATGATTTCAATTCCTTTGACCAACCTGAATGAACACTGGGGAATCAACCC GAATAATGATGTACTAAAAGTCAACATTTCCCACGTTTCGCGGACTAGTTCGCTCACAGCAACGCGGATAAGGAAAAAACGCAAGTCAAGGAGTATCTCG GTTGAACCGACGTTCTACGCTGGTCGGTTCTTGGTCGAGGAAGCTGCAGATACGTTCTTATCTTTCGGAGGATGGGGAAAAGGAGTCGCCTTCGTTAATG ATTTCAACATCGGAAGATACTGGCCGTCTTTTGGACCACAATGCAGCCTTTATGTCCCTGCTCCAGTCCTTAAGCATGGGGAGAATGTTCTGGTCGTATT TGAGCTGGAATCTCCAAATTCGGAGGTTTCAGTGCTTTCGGTTGATCATCAAGATTTCACATGTGGTTCGAGGAAACAAAAATTGCAGACATTGAATGTA ATTTAA
AA sequence Show only first row Show all	>Lus10037634 pacid=23167111 polypeptide=Lus10037634 locus=Lus10037634.g ID=Lus10037634.BGIv1.0 annot-version=v1.0 MARRRRGITHIALLFLLLLALALLCAFIPVFALLPSISLAATTSPRQRGDARTFEIADDKFWKDGHPYRIIGGDLHYFRTLPECWEDRLLKAKALGLNTI QTYVPWNLHEPQPGKLSFEGIADLVSFLRLCHKLDLLVMLRAGPYVCGEWDLGGFPAWLLATEPPLKLRSSDRNYLQLVDRWWGTLLPKIEPLLYNNGGP IIMVQIENEFGSYGDDQTYLRHLVRLARRHLGDGIILYTTDGGARENLERGTIRGDSVFSAVDFTTGDDPWPIFKLQKEFNAAGKSPPLSTEFYTGWLTH WGEKIATTDADFTASSLEKILSLNGSAVLYMAHGGTNFGFYNGANTGTDESDYKPDLTSYDYDAPISESGDVDGSKFSALREVIGRYSETSLPPLPANTV KRGYGLIELRKTSSLFHLLDLAKPGNGDGVESENPLSMESLGQMFGFMLYVTNYSAKDIGNSLSIPVVHDRAQVFTSCTSGNNRRPKYIGTIERWSNKQL GLPNAKCTSNTSLFILVENLGRINYGKYMFDRKGILHSVYLDGKVLNGWRMISIPLTNLNEHWGINPNNDVLKVNISHVSRTSSLTATRIRKKRKSRSIS VEPTFYAGRFLVEEAADTFLSFGGWGKGVAFVNDFNIGRYWPSFGPQCSLYVPAPVLKHGENVLVVFELESPNSEVSVLSVDHQDFTCGSRKQKLQTLNV I

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Lus10037634 [exp]	0	1
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10004434 [exp]	11.4	0.7628
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10012578 [exp]	14.9	0.7843
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	18.2	0.7604
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	24.0	0.7761
AT1G06470			Nucleotide/sugar transporter f...		Lus10010954 [exp]	27.4	0.7631
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10015064 [exp]	39.5	0.7420
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10002950 [exp]	44.3	0.7256
AT3G26670			Protein of unknown function (D...		Lus10041504 [exp]	48.1	0.7349
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	52.8	0.7483
AT2G26800			Aldolase superfamily protein (...		Lus10036056 [exp]	60.3	0.7341

Compare expression of checked genes

Lus10037634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.