Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02485 241 / 1e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G31600 72 / 1e-14 AtTRM9 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015618 [exp] 377 / 3e-134 AT4G02485 238 / 1e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037263 [exp] 61 / 8e-11 AT1G31600 459 / 4e-162 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G131200 [exp] 269 / 3e-91 AT4G02485 239 / 2e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G106300 [exp] 77 / 2e-16 AT1G31600 450 / 2e-159 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10037635 pacid=23167273 polypeptide=Lus10037635 locus=Lus10037635.g ID=Lus10037635.BGIv1.0 annot-version=v1.0 ATGGACGAATCACATTGGCAGAAGGCGCTGATGATCGACGCATTCGGCGAATCCTCAGGCAGCGAAGAAGACGAATCAACCGGCGGCGATGCACTTAGCT CGATTTGGGAGCCTGTAGTCGAAATCAGAGGGCTATGGCTATCCAGAGACTTCCTATCTCCTCTGCGACAGTCGCGTCTCCTTAACTCCCTCCACCAAGA AGGATGGTTCGGTGAAGCTTCTAACAACCAGGCTATGAGGTTCGGAGACCTTCCTCCGTGGGCGATTGAGCTTAGCGATTCTGTTCGGGAGGCGGTGGTA CTTGGGGAAGATGCGACGGGAGCATTTCCATTTCCGCCATATGTTCTGTCGAGAGAGCCGCTGTTCGACCAGTTGATTGCCAATCGGTACCAACCCGGCG AGGGAATATGTGCGCACGTTGATCTGATGCGGTTCGAGGATGGGATCGCGATCGTGTCTCTAGAGTCTTCGTGCGTGATGCATTTCAGCAGAGAGAGTTG CGACGAGGAGGAAGAGAAAAAGGTCGCGGTGTACTTGTCCCCGGGATCGCTGGTGCTTCTATCGGGAGATGCACGGTACAGATGGAAGCACGAGATCAAT CGGAAACCGGGTTTCCAGGTTTGGGAAGGTGAGGAGTTGGATCAGTTGCAGAGAACCTCCATAACCTTGAGAAGGCTTTGCCCCAGCTGA
AA sequence Show only first row Show all	>Lus10037635 pacid=23167273 polypeptide=Lus10037635 locus=Lus10037635.g ID=Lus10037635.BGIv1.0 annot-version=v1.0 MDESHWQKALMIDAFGESSGSEEDESTGGDALSSIWEPVVEIRGLWLSRDFLSPLRQSRLLNSLHQEGWFGEASNNQAMRFGDLPPWAIELSDSVREAVV LGEDATGAFPFPPYVLSREPLFDQLIANRYQPGEGICAHVDLMRFEDGIAIVSLESSCVMHFSRESCDEEEEKKVAVYLSPGSLVLLSGDARYRWKHEIN RKPGFQVWEGEELDQLQRTSITLRRLCPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02485			2-oxoglutarate (2OG) and Fe(II...		Lus10037635 [exp]	0	1
AT1G68220			Protein of unknown function (D...		Lus10043484 [exp]	4.7	0.7948
AT3G01410			Polynucleotidyl transferase, r...		Lus10014521 [exp]	9.2	0.7636
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10015411 [exp]	13.6	0.7572
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10015664 [exp]	16.0	0.7576
AT3G15420			Transcription factor TFIIIC, t...		Lus10001401 [exp]	17.1	0.7195
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10013548 [exp]	17.7	0.7520
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	18.2	0.7583
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10012532 [exp]	19.1	0.7532
AT1G53490			RING/U-box superfamily protein...		Lus10005260 [exp]	21.5	0.6752
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10037678 [exp]	22.6	0.7510

Compare expression of checked genes

Lus10037635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.