Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63100 323 / 4e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G44600 151 / 8e-44 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G44590 141 / 5e-40 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015621 [exp] 533 / 0 AT5G63100 333 / 3e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10038404 [exp] 156 / 1e-45 AT5G44600 301 / 7e-101 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001217 [exp] 110 / 3e-28 AT5G44600 197 / 1e-60 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024993 [exp] 41 / 0.0006 AT2G26200 726 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G082432 [exp] 364 / 2e-126 AT5G63100 360 / 8e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G073000 [exp] 164 / 8e-49 AT5G44600 331 / 1e-112 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037637 pacid=23167080 polypeptide=Lus10037637 locus=Lus10037637.g ID=Lus10037637.BGIv1.0 annot-version=v1.0 ATGGAAGACGTGAAAATCCTGGCCCGATTCAAGTCGCGATACAACTACATTCGAGTACTCGAAGTCGCCAGAAGAGCCGAGCATCCTCTCGCCGGCTCTC GTCTCCTCCTCCTCGACGCTCCGGGAAACATCCACAGCATGTCTTACCGCTTCACCAACGACTCCCTCACCCACGCTTACTACGACGTTTTCGCTACCTT ACCGCCGATTCTCCCGCAATCCGGAGCTCCCATCGCAATTCTTGGGTTCGGAGCCGGCTCTACAGCTAAATTGATTCTGGAGATGTACCCTGAAGTGACG ATTCACGGCTGGGAGCTGGACCCGTCGGTGATAGACATCGGGAGGGAGTTCTTTGGACTGAAGAAGCTTGAATTCCAGCACAAGGACAGGCTGTCGATCT TCATCGGAGACGCTCTGACTGCCGGAGTGAAAGACGGTTACGCTGGGATTCTTATCGACTTGTTTGCCAAAGGGAGTGTGATACCGGAGCTTCAGGATCC AAATACGTGGGAGATGCTCAGAAGGTGTTTGATGAAATGCGGCAGAATGATGGTTAACGTTGGTGGGAGCTGCGTGGAGTCTGAGAACAAACGGCGAGAT GGGAAGGTGGTTATGGAGGATACTCTGAATGCAATGCATAAGGTCTTTGGTGATCAAATTCATGTCTTGGAGCTCGGAGATCCATACTTCGAGGATAGCA CGTTGGCGCTTACAGGTGCTATGCCGGATCGCAAAGCTTGGAAGAAGGCCATTCCGATTAAGGCGTTGAGGGGTTACGTCGATATGTGGAAGCCATTCTA A
AA sequence Show only first row Show all	>Lus10037637 pacid=23167080 polypeptide=Lus10037637 locus=Lus10037637.g ID=Lus10037637.BGIv1.0 annot-version=v1.0 MEDVKILARFKSRYNYIRVLEVARRAEHPLAGSRLLLLDAPGNIHSMSYRFTNDSLTHAYYDVFATLPPILPQSGAPIAILGFGAGSTAKLILEMYPEVT IHGWELDPSVIDIGREFFGLKKLEFQHKDRLSIFIGDALTAGVKDGYAGILIDLFAKGSVIPELQDPNTWEMLRRCLMKCGRMMVNVGGSCVESENKRRD GKVVMEDTLNAMHKVFGDQIHVLELGDPYFEDSTLALTGAMPDRKAWKKAIPIKALRGYVDMWKPF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63100			S-adenosyl-L-methionine-depend...		Lus10037637 [exp]	0	1
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10034687 [exp]	3.7	0.7452
AT4G32790			Exostosin family protein (.1)		Lus10014425 [exp]	16.9	0.6989
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10033052 [exp]	17.5	0.6919
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10010547 [exp]	22.4	0.6835
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10018230 [exp]	23.5	0.6814
AT1G31830			Amino acid permease family pro...		Lus10003232 [exp]	26.2	0.6596
AT5G25820			Exostosin family protein (.1)		Lus10014424 [exp]	33.4	0.6732
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017765 [exp]	34.1	0.6628
AT3G62930			Thioredoxin superfamily protei...		Lus10005940 [exp]	36.7	0.6628
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10021165 [exp]	40.4	0.6549

Compare expression of checked genes

Lus10037637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.