Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17620 185 / 1e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G11890 134 / 6e-38 EMB3135 EMBRYO DEFECTIVE 3135, unknown protein AT2G27080 74 / 2e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT5G36970 71 / 4e-14 NHL25 NDR1/HIN1-like 25 (.1) AT1G65690 70 / 4e-14 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G54540 68 / 2e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G21130 68 / 4e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G46300 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11650 62 / 3e-11 NHL2 NDR1/HIN1-like 2 (.1) AT5G53730 61 / 6e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015622 [exp] 392 / 2e-139 AT1G17620 196 / 5e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003824 [exp] 277 / 5e-94 AT1G17620 191 / 5e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10026428 [exp] 160 / 8e-48 AT5G11890 209 / 7e-67 EMBRYO DEFECTIVE 3135, unknown protein Lus10024987 [exp] 88 / 2e-21 AT5G11890 87 / 5e-21 EMBRYO DEFECTIVE 3135, unknown protein Lus10007364 [exp] 72 / 2e-14 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10010103 [exp] 63 / 2e-11 AT4G01410 198 / 7e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020783 [exp] 61 / 1e-10 AT5G36970 229 / 2e-75 NDR1/HIN1-like 25 (.1) Lus10016962 [exp] 59 / 5e-10 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021288 [exp] 57 / 2e-09 AT2G35980 237 / 2e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G039400 [exp] 253 / 3e-84 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G200700 [exp] 250 / 2e-83 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.018G052500 [exp] 169 / 2e-51 AT5G11890 198 / 3e-62 EMBRYO DEFECTIVE 3135, unknown protein Potri.006G228600 [exp] 167 / 1e-50 AT5G11890 171 / 4e-52 EMBRYO DEFECTIVE 3135, unknown protein Potri.012G145500 [exp] 78 / 1e-16 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1) Potri.015G148200 [exp] 76 / 4e-16 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1) Potri.002G167300 [exp] 74 / 1e-15 AT2G46300 177 / 5e-55 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G067100 [exp] 74 / 3e-15 AT1G54540 203 / 3e-65 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 72 / 1e-14 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G158900 [exp] 71 / 3e-14 AT2G27080 259 / 8e-87 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10037638 pacid=23167193 polypeptide=Lus10037638 locus=Lus10037638.g ID=Lus10037638.BGIv1.0 annot-version=v1.0 ATGGAGGAGAAAGTCTATCCAGCCAAACCCCCCACCGACACTCCGGCGGCGGCACCACCACCGCCACCAGCACCAACAACTGCCACCGCCACCGCCGCAT TTCCCGCGACGAAATCACAACTCTACGGCGCCAATCGTCCAGCCTACCGTCCTCAACCTCAACGCAAGTTCCGCAGCCGGAGGAGCTGCTGCTGCCGCCT CTGCTTCTGGATCACACTGATCCTCCTCCTCCTAATTCTCCTCGCCGCCATCGCCGGCTCCGCCGTCTACCTAATCTACCGCCCCCACCGCCCTACATTC GCCGTCTCCGGAGTGCGGATCTCGGCTCTAAACGTCTCCTCTACCTCCCAGCTCACCTCGAACATCGCCGTCAACATCACCGCCCGGAACCCTAACAAAA ACGTCGTATTCGTCTACGATCCGGTTGGAATTTCATTGCTATCCGACGGAGTCGATTTGGGGGAAGGAACTGTACCGGCGTTCGTTCACGGGAAGAAGAA CTCGACGATTCTTAAGGTCTCGATTAATAGCGGAGGGGGGAAGAAGCTTGAGGATTCCGCCGCCGCGAAGCTGAGGAAGGAGCTGAAGGGGAAAAACGGC GTCGGGTTGAGGATCGTTGTTGATACCAAAGTGAAGGTGAAGATGGGAGGGATGAAGACTCCGAAGTTTCCGATTCGAGTTTCCTGCTCAGGGATTAAAG GTTCGGCGCCGACGGGGAAGTCGCCGACTACTGGATCTGTTTCCGGCGCCGACTGTAAGGTCGATTTGAGAGTCAAGATCTGGAAGTGGACTTTCTGA
AA sequence Show only first row Show all	>Lus10037638 pacid=23167193 polypeptide=Lus10037638 locus=Lus10037638.g ID=Lus10037638.BGIv1.0 annot-version=v1.0 MEEKVYPAKPPTDTPAAAPPPPPAPTTATATAAFPATKSQLYGANRPAYRPQPQRKFRSRRSCCCRLCFWITLILLLLILLAAIAGSAVYLIYRPHRPTF AVSGVRISALNVSSTSQLTSNIAVNITARNPNKNVVFVYDPVGISLLSDGVDLGEGTVPAFVHGKKNSTILKVSINSGGGKKLEDSAAAKLRKELKGKNG VGLRIVVDTKVKVKMGGMKTPKFPIRVSCSGIKGSAPTGKSPTTGSVSGADCKVDLRVKIWKWTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17620			Late embryogenesis abundant (L...		Lus10037638 [exp]	0	1
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	1.0	0.9845
AT5G26330			Cupredoxin superfamily protein...		Lus10041211 [exp]	2.0	0.9667
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10034652 [exp]	4.5	0.9432
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10032530 [exp]	4.6	0.9638
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	5.3	0.9625
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Lus10032236 [exp]	6.3	0.9597
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10025879 [exp]	6.6	0.9510
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10009428 [exp]	7.5	0.9540
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039175 [exp]	7.7	0.9508
AT3G25590			unknown protein		Lus10034409 [exp]	9.5	0.9454

Compare expression of checked genes

Lus10037638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.