Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63480 104 / 5e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G099200 [exp] 129 / 1e-37 AT5G63480 163 / 2e-51 unknown protein Potri.015G097800 [exp] 126 / 2e-36 AT5G63480 162 / 1e-50 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037639 pacid=23167240 polypeptide=Lus10037639 locus=Lus10037639.g ID=Lus10037639.BGIv1.0 annot-version=v1.0 ATGTCGTCTCCGCCGCTCGCCAAGACCACGCAGGATCTCGCCATGGAAGGGAAGAAGCATCTCGAGGACACGATACAGTCCGCTTTCCAGATACTCTCCT CCATGAACGACGAGCTATGCAATCCGGCGCTGTGGTCGACTTCCTCCGTCGGCTCTGCTCTCGATTCCACTCCTCCTCCTCTTACTGCTGCTCTAGCGAC TACTTCAGCTGCGAGTAACGGCCCTTCGCAAAACGGCGGCGGCGGACTTCTCAACGGCGATTCCGCTTCCGAGACTTCGCTTCACTTGGACGGCGGTGGA GTTGTCTCCGCTGGCGGTGGGACCTGTAACGGAGCATTGGATGAAGCTAGATTCAAGTATAAGAGCTCTGTGGCTGCTCTCCGTGACGTTCTCGCTGCGA TTCCCAATTCTCAGAAGGCTAAGCCATTCGAAGCAGATTCGGCTGCAAGCGATTCCCCGTCTCCAGAAGATGAATCCGACAATGACAAACTAGAAGAGCG AGCCTCAAATCTTCGAAAGCTTGGATTCTCACCGATGTCAGCCGGTGATCCTTACTGCCTCGAAAGTGGGACGGCATATATTTCTTGTCCTACAAGAAAC AGTTGTGTTGGTCCAATGGTTCAAATCTATGACAGAAGTTGA
AA sequence Show only first row Show all	>Lus10037639 pacid=23167240 polypeptide=Lus10037639 locus=Lus10037639.g ID=Lus10037639.BGIv1.0 annot-version=v1.0 MSSPPLAKTTQDLAMEGKKHLEDTIQSAFQILSSMNDELCNPALWSTSSVGSALDSTPPPLTAALATTSAASNGPSQNGGGGLLNGDSASETSLHLDGGG VVSAGGGTCNGALDEARFKYKSSVAALRDVLAAIPNSQKAKPFEADSAASDSPSPEDESDNDKLEERASNLRKLGFSPMSAGDPYCLESGTAYISCPTRN SCVGPMVQIYDRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63480			unknown protein		Lus10037639 [exp]	0	1
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10032352 [exp]	7.3	0.7972
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10016582 [exp]	26.1	0.7527
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037745 [exp]	70.0	0.7454
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10016879 [exp]	71.0	0.7314
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037744 [exp]	96.0	0.7269
					Lus10036102 [exp]	144.6	0.7038
AT1G62975	bHLH	bHLH125	basic helix-loop-helix (bHLH) ...		Lus10006707 [exp]	150.3	0.6821
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10026569 [exp]	159.7	0.6876

Compare expression of checked genes

Lus10037639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.