Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72970 768 / 0 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G12570 568 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 536 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 522 / 5e-180 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 494 / 4e-169 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 471 / 8e-161 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 397 / 2e-132 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 390 / 1e-129 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015623 [exp] 1114 / 0 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10003176 [exp] 915 / 0 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10024487 [exp] 613 / 0 AT1G12570 709 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10002957 [exp] 602 / 0 AT1G12570 701 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10017827 [exp] 598 / 0 AT1G12570 710 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10031663 [exp] 530 / 0 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10027406 [exp] 530 / 0 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015012 [exp] 516 / 8e-178 AT5G51950 667 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10038891 [exp] 514 / 2e-176 AT5G51950 668 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G200800 [exp] 879 / 0 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.003G039000 [exp] 870 / 0 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G111500 [exp] 640 / 0 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G009600 [exp] 460 / 3e-156 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.012G135200 [exp] 405 / 3e-136 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G168200 [exp] 383 / 3e-126 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 380 / 3e-125 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168100 [exp] 376 / 1e-123 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G249501 [exp] 83 / 8e-19 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10037640 pacid=23167020 polypeptide=Lus10037640 locus=Lus10037640.g ID=Lus10037640.BGIv1.0 annot-version=v1.0 ATGGTAAACAATAGACCAACCAGTCACAGCCACATAGCTTACAAGTCAGAGAAATATTTTGAAGTTCTACTCCTCTACTTCGCCTCCGTGCATGTTTCGA TCCGGTTCTGGTGCTACAACTGTGATCTTTCATTTTCGGTTGCAGCCAATGGATTCTATGAGTACAAGTATCCATTCATAAGGAAAGCAAGCACATTCCA ACCAAACACCCCCTATGACTACATAATTGTTGGTGGAGGAACAGCAGGGTGTCCATTGGCAGCAACACTGTCACAGAACTTCACAGTTCTGTTGCTTGAG AGAGGAGGTGTCCCATTTGCAAACCCTAATGTCACATTCCTCAAGAACTTCCACATTACCTTGGCTGATACTTCTCCAACCTCTGCTTCCCAGTTCTTTG TCTCCAATGATGGTGTTCTTAACTCCAGAGCCAGAGTTCTGGGTGGTGGGACTTCCATCAATGCTGGCTTTTACACTAGAGCCAGCCAAAGGTTTATCGA AAAGGTTGGTTGGGACACAATGCTAGTGAACCAATCATACCCATGGGTTGAGCAACAAATAGTCCACAAGCCACAAGTAGCACAATGGCAACTTGCAGTA AGGGACAGCCTACTAGACCTTGGCATCTCACCTGACAATGGCTTCACCTATGACCACATCTCCGGGACCAAATTCGGCGGCACGATCTTCGACCGGTTCG GCCGAAGACACACAGCAGCCGAACTCCTCGCCACCGCCAACCCTCGAACCCTAACCGTCCTGGTCCACGCCACGGTCCAAAGAGTACTCTTTGACACAAA TGCCCCCAACATCACAACAAGTCCAAGAGCCGTTGGTGTGAAGTTCAAGGACGAAACGGGGAAATACCACCAAGCATTGTTGAGGAACGATGATGGCACG AAAAGCGAGGTCATACTCTCGTGTGGCGCGATCGGTACACCTCAGATGATGCTGCTCAGTGGGATTGGACCAGGAACTGATCTTGAAAAGTTGAACATCT CAGTAGTGGTGGAGAATATCCATGTTGGTCAAGGAATGGCTGATAATCCGATGAATTCGATCTTCGTTCCCTCGAATGTACCGGTGAATCAATCGCTTAT CCAGACCGTTGGAATCACAAAGCTGGGAGTCTACATTGAGGCAAGCAGTGGATTTGGACAGTCCAATGACAGCATAGAGTGTCACCATGGGATCATGTCA GCCGAAATCGGGCAGATATCTACGATCCCTCCGAGGCAAAGGACTCCCGAGGCAATTCGAGCTTACATTGACAAAAAGAAAGATTTGCCATATGAGGCAT TCAAAGGAGGGTTCATTTTGGAAAAAATCGCAAACCCTCTCTCGAGAGGTCAACTCACATTGACCGATACGAACGTCGAGGTCAACCCTTCCGTGACATT CAACTACTTCAGCGACCCAAGGGACCTCGAGCGATGCGTGGAAGGGGTTAGGTTGGCTATGAAGATCGTGCAGATGAAGCGATTCACCGAGATGGTGAAG TGCGACAGCCAGACTGTGGAGAAGATTCTTAATGCTAGTGTGCATGCCAATGTTAACTTGGTCACCAAGCAAGCCAACGACACCGAGTCGCTCGAGCAGT TCTGTAAAGACACCGTGATCAGTATCTGGCATTATCATGGTGGATGTCATGTTGGGAAAGTGGTGGATTCGGAGCACAAAGTGCTTGGTGTCGAGAGGCT TCGGGTTGTTGATGGCTCGACTTTCGATGAATCGCCCGGGACTAATCCCCAAGCTACTGTCCTGATGATGGGAAGGTACATGGGGCTGAAGATTTTGGAA GAGAGACTGGGGAAAGCAGCAGCTGGTGTTTGA
AA sequence Show only first row Show all	>Lus10037640 pacid=23167020 polypeptide=Lus10037640 locus=Lus10037640.g ID=Lus10037640.BGIv1.0 annot-version=v1.0 MVNNRPTSHSHIAYKSEKYFEVLLLYFASVHVSIRFWCYNCDLSFSVAANGFYEYKYPFIRKASTFQPNTPYDYIIVGGGTAGCPLAATLSQNFTVLLLE RGGVPFANPNVTFLKNFHITLADTSPTSASQFFVSNDGVLNSRARVLGGGTSINAGFYTRASQRFIEKVGWDTMLVNQSYPWVEQQIVHKPQVAQWQLAV RDSLLDLGISPDNGFTYDHISGTKFGGTIFDRFGRRHTAAELLATANPRTLTVLVHATVQRVLFDTNAPNITTSPRAVGVKFKDETGKYHQALLRNDDGT KSEVILSCGAIGTPQMMLLSGIGPGTDLEKLNISVVVENIHVGQGMADNPMNSIFVPSNVPVNQSLIQTVGITKLGVYIEASSGFGQSNDSIECHHGIMS AEIGQISTIPPRQRTPEAIRAYIDKKKDLPYEAFKGGFILEKIANPLSRGQLTLTDTNVEVNPSVTFNYFSDPRDLERCVEGVRLAMKIVQMKRFTEMVK CDSQTVEKILNASVHANVNLVTKQANDTESLEQFCKDTVISIWHYHGGCHVGKVVDSEHKVLGVERLRVVDGSTFDESPGTNPQATVLMMGRYMGLKILE ERLGKAAAGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	0	1
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017391 [exp]	1.7	0.9108
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10004571 [exp]	2.0	0.9271
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10015623 [exp]	3.0	0.8734
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	3.2	0.9146
AT5G01790			unknown protein		Lus10030550 [exp]	3.7	0.8816
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10041362 [exp]	3.9	0.8879
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002501 [exp]	4.0	0.8905
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10000338 [exp]	4.9	0.8771
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007658 [exp]	5.5	0.8870
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034540 [exp]	7.7	0.8732

Compare expression of checked genes

Lus10037640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.