Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13870 1068 / 0 GOM8, RHD3 GOLGI MUTANT 8, Root hair defective 3 GTP-binding protein (RHD3) (.1), Root hair defective 3 GTP-binding protein (RHD3) (.2) AT1G72960 1065 / 0 Root hair defective 3 GTP-binding protein (RHD3) (.1) AT5G45160 966 / 0 Root hair defective 3 GTP-binding protein (RHD3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036195 [exp] 1008 / 0 AT5G45160 1216 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10040630 [exp] 998 / 0 AT5G45160 1221 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10038333 [exp] 981 / 0 AT5G45160 1217 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10015623 [exp] 892 / 0 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10018282 [exp] 872 / 0 AT5G45160 1055 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10018281 [exp] 208 / 9e-62 AT5G45160 300 / 9e-97 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10036197 [exp] 174 / 6e-51 AT5G45160 239 / 2e-75 Root hair defective 3 GTP-binding protein (RHD3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038900 [exp] 1135 / 0 AT3G13870 1220 / 0.0 GOLGI MUTANT 8, Root hair defective 3 GTP-binding protein (RHD3) (.1), Root hair defective 3 GTP-binding protein (RHD3) (.2) Potri.001G201000 [exp] 1107 / 0 AT1G72960 1204 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.015G112700 [exp] 966 / 0 AT5G45160 1161 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116130 [exp] 639 / 0 AT5G45160 707 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116700 [exp] 605 / 0 AT5G45160 727 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116210 [exp] 604 / 0 AT5G45160 719 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.015G112600 [exp] 589 / 0 AT5G45160 717 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116000 [exp] 588 / 0 AT5G45160 671 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G117300 [exp] 519 / 9e-175 AT5G45160 620 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G117100 [exp] 405 / 9e-133 AT5G45160 507 / 3e-172 Root hair defective 3 GTP-binding protein (RHD3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF05879 [flax] [poplar] RHD3 Root hair defective 3 GTP-binding protein (RHD3)
Representative CDS sequence Show only first row Show all	>Lus10037641 pacid=23167088 polypeptide=Lus10037641 locus=Lus10037641.g ID=Lus10037641.BGIv1.0 annot-version=v1.0 ATGGCAAGTGATTGTTGCTCAACACAACTCATTGATGGAGATGGCGAATTCAATGTCTCCGGAATTGACAATTTCATCAAGGATGTTAAATTGGCCGAAT GCGGAATCTCATACGCTATCGTATCCATCATGGGGCCTCAAAGTAGCGGTACATTCCCCGCATTTTTTACCATAACTGAACTGTGTCCCGAGGAGCCTAT TCCGAATTTCCGCTCTGTAACAGTGTTGCTCACCAGTTTCTTATGGTCTCAAACTACAAAGGGTATTTGGCTAGCGAAGTGTGCCGAAATTGAACCTTGT ACGTTGGTGATGGATTTGGAAGGAACCGACGGAAGAGAGCGTGGAGAAGATGATACAGCATTTGAGAAGCAAAGTGCACTATTTGCCCTAGCTGTTTCAG ATATTGTGCTGATTAACATGTGGTGTCACGATATTGGTCGTGAACAAGCGGCAAATAAGCCGCTCTTGAAGACCGTATTCCAGGTCATGTTACGATTGTT TAGTCCTCGCAAGACGACATTGATGTTCGTAATACGTGACAAAAGCAAGACACCTTTAGAGAATTTAGAACCAGTTCTCAGAGAAGATATCCAGAAGATA TGGGACTCTGTTCCAAAACCACAAGCTCATGAGTCAACCCCACTCAGTGAATTCTTCAATGTTCAAGTTGTCGCTCTCTCGAGTTTCGAAGAGAAAGAAG AGCAGTTTCGAGAGCAGGTTGGTAATTTGAGAAAAAGATTCAACCAATCGATTGCGCCCGGTGGACTTGCCGGTGATCGGAGAGGTGCAGTTCCCGCATC AGGATTTTCTTTCAGTTCACAAGCTATATGGAAGGTTATCAAGGAGAACAAAGACCTTGATCTCCCTGCTCATAAGGTTATGGTGGCTACTGTCCGATGT GAAGAAATTGCTCATGAAAAGTACACCGAATTCGGCGCAAATCAGGAGTGGTGTGAAGTGGAAGAGGCAGTACAAACTGGTTATATTCAAGGGTTTGGAA AGAAACTCAGCTCAATACTCAACATTTGTCTAACTGAGTATGATAATGAAGCAACATACTTTGATGAAGGAGTCAGAACTTCAAAGAGGAAGCAACTTGA AGAAAAACTGTTACAACTTGTGCAACCGGCCTACCAAACCATGTTAGGGCACATTAGGGCAGGAACCTTTGACAAATTCAAGGAAGCATTTGAGAAGGCT CTCAATGCTGGAGAGGGGTTCTCCTTGGCTTCCACTACTTGTGCCCAGTCATTTATGTCTCAGTTCGACGAAGCCTGTACAGATGCTGTAATTCACCAAG CGAATTGGGATGCGTCGAAAGTGAAAGATAAGCTCCGTCGCGACATTGATTCCCACATTGCTACCGTTCGTGATGCGAAACTCGCCGAGCTTACTTCATC ATTCGAGACAAAGTTAAACCATGCATTAGCAGCACCGGTGGAAGCGCTGCTGGATGGGGCTAACCATGAGACATGGTCGTCGATAAGAAAGCTATTGAAG CAGGAGTCTGACTCAGCCGTCTCCGAGATGTCCCACGATCTCAAAGGCTTCGACATGGACGAGAAGGCGAAGGAAGAGATGCTTGGGAACTTGGAGAACC ATGCCAAAAGTGTCGTCGAATCTAAAGCCAAGGAAGAAGCTGCTAGGGTTCTTATTCGTATGAAGGACAGGTTTTCAATGTTGTTTAGTCATGATGCTGA TTCGATGCCTCGGGTTTGGACCGGTAATGAAGATATTCGAGCAATTACCAAAACTGCTCGATCTGCTTCCGTGAAGTTATTATCGGTGATGGCCGCAATT CGTTTGGATAACAATGCTGATACGATTGAGAAATTATTATCATCTTATTTGTTGGAACCAACTACTGATAAAAGCACTGCTGCCACATCCGATCCATTAG CCTCGAGCACTTGGAAAGAGATTCCATCGTCGAGAACATTGATAACACCAGTTCAATGTAAATCCGTGTGGAGGCAGTTCAAGGCGGAGACTGAGTATAG CGTCACTCAAGCCATTTCTGCTCAGGCATCAACTTCTTCTACTCTATATACAACCTTTCATTCGACTAACTTTGATCACGAAGCAAATAAACGTAACAAC AATTGGTTACCACCTCCATGGGCTATTCTTGCCTTGGTTATTTTGGGCTTTAATGAATTCATGACAGTTTTGAGGAATCCATTTTATTTGGCTGTGATAT TCGTTGGGTTTTTACTTGCTAAAGCCTTGTGGGTGCAAATGGATGTTGCTGGTGAATTTCGACACGGTGCTCTCCCCGGGCTTATAGCACTATCGGCAAA GTTCCTTCCGACGATAATGAACATAGTCGGGAAGCTAGTAGAGGAAGGCCAGAAAGCGGCTCAAGCAGCGGCTGCTAACAATCCGCCTGCCTCTGACGAG GACAATACGAGAAGGAACAAAACTTCTTCGCCAACGACAAGTTCATCGTCGTCGGTAGTGTCGGCGAAAGAAGATTAA
AA sequence Show only first row Show all	>Lus10037641 pacid=23167088 polypeptide=Lus10037641 locus=Lus10037641.g ID=Lus10037641.BGIv1.0 annot-version=v1.0 MASDCCSTQLIDGDGEFNVSGIDNFIKDVKLAECGISYAIVSIMGPQSSGTFPAFFTITELCPEEPIPNFRSVTVLLTSFLWSQTTKGIWLAKCAEIEPC TLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMLRLFSPRKTTLMFVIRDKSKTPLENLEPVLREDIQKI WDSVPKPQAHESTPLSEFFNVQVVALSSFEEKEEQFREQVGNLRKRFNQSIAPGGLAGDRRGAVPASGFSFSSQAIWKVIKENKDLDLPAHKVMVATVRC EEIAHEKYTEFGANQEWCEVEEAVQTGYIQGFGKKLSSILNICLTEYDNEATYFDEGVRTSKRKQLEEKLLQLVQPAYQTMLGHIRAGTFDKFKEAFEKA LNAGEGFSLASTTCAQSFMSQFDEACTDAVIHQANWDASKVKDKLRRDIDSHIATVRDAKLAELTSSFETKLNHALAAPVEALLDGANHETWSSIRKLLK QESDSAVSEMSHDLKGFDMDEKAKEEMLGNLENHAKSVVESKAKEEAARVLIRMKDRFSMLFSHDADSMPRVWTGNEDIRAITKTARSASVKLLSVMAAI RLDNNADTIEKLLSSYLLEPTTDKSTAATSDPLASSTWKEIPSSRTLITPVQCKSVWRQFKAETEYSVTQAISAQASTSSTLYTTFHSTNFDHEANKRNN NWLPPPWAILALVILGFNEFMTVLRNPFYLAVIFVGFLLAKALWVQMDVAGEFRHGALPGLIALSAKFLPTIMNIVGKLVEEGQKAAQAAAANNPPASDE DNTRRNKTSSPTTSSSSSVVSAKED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72960			Root hair defective 3 GTP-bind...		Lus10037641 [exp]	0	1

Compare expression of checked genes

Lus10037641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.