Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13772 1070 / 0 AtTMN7 transmembrane nine 7 (.1) AT1G55130 1037 / 0 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT2G24170 935 / 0 Endomembrane protein 70 protein family (.1) AT5G10840 928 / 0 Endomembrane protein 70 protein family (.1) AT5G25100 927 / 0 Endomembrane protein 70 protein family (.1.2) AT5G35160 514 / 9e-176 Endomembrane protein 70 protein family (.1.2) AT4G12650 464 / 3e-156 Endomembrane protein 70 protein family (.1) AT2G01970 340 / 1e-108 Endomembrane protein 70 protein family (.1) AT1G14670 340 / 1e-108 Endomembrane protein 70 protein family (.1) AT5G37310 334 / 2e-106 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015624 [exp] 1208 / 0 AT3G13772 1133 / 0.0 transmembrane nine 7 (.1) Lus10000222 [exp] 945 / 0 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026254 [exp] 944 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10042415 [exp] 942 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10027831 [exp] 513 / 5e-175 AT5G35160 1104 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10005060 [exp] 507 / 9e-173 AT5G35160 1100 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10016072 [exp] 498 / 5e-169 AT4G12650 1123 / 0.0 Endomembrane protein 70 protein family (.1) Lus10019073 [exp] 383 / 3e-125 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10042286 [exp] 328 / 3e-104 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038700 [exp] 1101 / 0 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.018G106600 [exp] 951 / 0 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G184200 [exp] 946 / 0 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G018400 [exp] 943 / 0 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G264500 [exp] 927 / 0 AT5G10840 1059 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G189300 [exp] 505 / 3e-172 AT5G35160 1122 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.018G113500 [exp] 505 / 5e-172 AT5G35160 1127 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.002G217300 [exp] 486 / 9e-165 AT4G12650 1122 / 0.0 Endomembrane protein 70 protein family (.1) Potri.014G172200 [exp] 480 / 3e-162 AT4G12650 1115 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144181 [exp] 347 / 3e-111 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10037643 pacid=23167142 polypeptide=Lus10037643 locus=Lus10037643.g ID=Lus10037643.BGIv1.0 annot-version=v1.0 ATGGCCACTCTCTTCTTCTTCTTCTTCGCCGCCTTCATCCTCCTCCTTTCCTCCCCCGCCACCTCCTTCTACCTCCCCGGCGTCGCCCCTCGCGACTTCC AGCGAGGTAGTGTCCTGAATGTTAAAGTGAACAAACTGTCGTCTACGAAGACGCAGCTCCCGTACGACTACTATTTCCTGAAATACTGTAAGCCACAGAA GATCGAGAACAGTGCTGAGAATCTGGGGGAGGTCCTTAGAGGTGATCGCATTGAGAATTCCGTCTATACTTTTGAAATGATGGAAGATCAATCATGCAAA ATTGCTTGTAAGGCAACCCTTAATGACAAAGCGGCCAAGAATTTCAAGGAGAAGATCGACGATGAGTATCGGGTTAACATGATACTGGATAATCTTCCTG TAGCTGTCATAAGAAAAAGGAGGGATGGTGCTCAGGCAACAACTTACGAACATGGTTTTCGAGTCGGGTTCAAAGGAAATTATGCCGGGAGTAAAGAGGA GAAATACTTTATCAATAACCACTTAAGCTTTACAGTAATGTATCACAGGGATCCTGAATCAGGATCTGCACGAATTGTCGGGTTCGAGGTTTCTCCAAGC AGCATTAATCATGAATACAAGGAATGGAATGATAAGAATACTCAGTTGACTACTTGCAATAAGGACACTAAGAATTTGATGCAAGGTAGCATTGTTCCTC AAGAAGTTGACAACGGCAAGGACGTGGTGTTCACGTATGATGTAGTCTTCAAGGATAGTGATATTAAATGGGCGTCACGCTGGGACACATACCTCCTCAT GAACGACGATCAGATTCATTGGTTCTCGATCATTAACTCGTTGATGATTGTGCTGTTCCTTTCCGGTATGGTAGCCATGATCATGCTTCGAACTCTGTAC AGAGACATTGCAAACTACAATCAGTTGGAAACCCAAGACGAGACTCAGGAGGAAACCGGGTGGAAACTCGTCCATGGAGATGTATTCCGAGCACCTACAA ATGCCGGTTTACTCTGTGTTTATCTTGGTACCGGGGTGCAGATCTTCGGTATGACTTTAGTGACCATGATATTCGCATTACTTGGCTTCCTCTCTCCTTC GAACCGAGGCGGTCTCATGACTGCTATGGTCCTTTTGTGGGTCTTCATGGGGATATTCGGCGGATATGCCTCAGCTCGTCTGTACAAAATGTTCAAAGGC ACCGAGTGGAAGAGGAACACCTTGAAAACCGCGTTCATGTTTCCCGGTATCCTTTTCGCAGTCTTCTTTGTTCTGAATGCTCTGATTTGGGGAGAGAAGT CTTCCGGTGCTGTGCCTTTCGGGACCATGTTCGCTCTGGTTTGCTTATGGTTCGGCATCTCGGTCCCTCTAGTCTTCCTTGGCAGTTACTTGGGTTTCAA GAAACCAGCAATCGAAGATCCGGTGAAAACGAACAAGATCCCGAGGCAAGTCCCCGAGCAAGCGTGGTACATGAAGCCTGTCTTCTCCATCTTAATCGGA GGGATTCTTCCGTTTGGTGCTGTCTTTATCGAGCTCTTCTTCATCTTGACGTCAATCTGGTTGAACCAGTTCTACTACATCTTCGGCTTCCTCTTCATAG TGTTTGTCATCTTATTGATCACTTGTGCAGAGATTACTATGGTTCTTTGCTACTTCCAGCTGTGCAGCGAGGACTACCAGTGGTGGTGGAGATCTTACCT CACTGCTGGCTCTTCTGCCGTGTACCTTTTCCTCTACTCGATCTTCTACTTCTTCACCAAGCTCGAAATCACAAAGTTCGTCTCGGGGGTCCTCTACTTT GGGTACATGGTGATCATCTCGTACGCCTTCTTCGTACTGACCGGAACTATCGGATTCTACGCTTGTTTCTGGTTCGTCAGGAAGATATACTCGTCCGTCA AAATCGACTGA
AA sequence Show only first row Show all	>Lus10037643 pacid=23167142 polypeptide=Lus10037643 locus=Lus10037643.g ID=Lus10037643.BGIv1.0 annot-version=v1.0 MATLFFFFFAAFILLLSSPATSFYLPGVAPRDFQRGSVLNVKVNKLSSTKTQLPYDYYFLKYCKPQKIENSAENLGEVLRGDRIENSVYTFEMMEDQSCK IACKATLNDKAAKNFKEKIDDEYRVNMILDNLPVAVIRKRRDGAQATTYEHGFRVGFKGNYAGSKEEKYFINNHLSFTVMYHRDPESGSARIVGFEVSPS SINHEYKEWNDKNTQLTTCNKDTKNLMQGSIVPQEVDNGKDVVFTYDVVFKDSDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMLRTLY RDIANYNQLETQDETQEETGWKLVHGDVFRAPTNAGLLCVYLGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGIFGGYASARLYKMFKG TEWKRNTLKTAFMFPGILFAVFFVLNALIWGEKSSGAVPFGTMFALVCLWFGISVPLVFLGSYLGFKKPAIEDPVKTNKIPRQVPEQAWYMKPVFSILIG GILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITMVLCYFQLCSEDYQWWWRSYLTAGSSAVYLFLYSIFYFFTKLEITKFVSGVLYF GYMVIISYAFFVLTGTIGFYACFWFVRKIYSSVKID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	0	1
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10023936 [exp]	1.7	0.9400
AT1G67930			Golgi transport complex protei...		Lus10007330 [exp]	3.0	0.9392
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	3.5	0.9395
AT1G67930			Golgi transport complex protei...		Lus10020754 [exp]	3.5	0.9378
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	5.9	0.9317
AT2G01970			Endomembrane protein 70 protei...		Lus10026371 [exp]	6.9	0.9184
AT5G52180			unknown protein		Lus10031574 [exp]	7.1	0.9059
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10006546 [exp]	8.4	0.9157
AT2G25800			Protein of unknown function (D...		Lus10008431 [exp]	8.8	0.8683
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10022989 [exp]	9.8	0.8924

Compare expression of checked genes

Lus10037643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.