Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13750 1410 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G36360 1113 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT4G26140 1019 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT3G52840 989 / 0 BGAL2 beta-galactosidase 2 (.1) AT1G45130 979 / 0 BGAL5 beta-galactosidase 5 (.1) AT5G56870 974 / 0 BGAL4 beta-galactosidase 4 (.1) AT2G28470 925 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT2G32810 860 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G63810 785 / 0 BGAL10 beta-galactosidase 10 (.1) AT5G20710 756 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015625 [exp] 1630 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 1442 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10025980 [exp] 1108 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10041798 [exp] 1103 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10028348 [exp] 1022 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10006009 [exp] 998 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10028848 [exp] 969 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10008974 [exp] 961 / 0 AT4G26140 1068 / 0.0 beta-galactosidase 12 (.1.2) Lus10024292 [exp] 948 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038500 [exp] 1437 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 1422 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 1250 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G018100 [exp] 1150 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 1150 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 995 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 924 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 895 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.017G057900 [exp] 862 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.011G044300 [exp] 862 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10037644 pacid=23167326 polypeptide=Lus10037644 locus=Lus10037644.g ID=Lus10037644.BGIv1.0 annot-version=v1.0 ATGGCTAAGAACAACCACAATGTGCTTTCCATTCTGATTTCCTCCATCTTCTTTCTGCAACTAGTACTCTGTTTTTCATCTGTTTCCGCCACCGTGACTT ACGATTCCACAGCGATTAAAATCAACGGACAAAGAAAGATTCTAATCTCTGGTTCAATCCACTACCCGAGAAGCACCCCTGAGATGTGGCCGGATCTTAT CCAGAAAGCTAAGGAAGGAGGGCTTGATGTTATCCAGACTTACGTCTTCTGGAATGGCCATGAGCCTTCTCCTGGAAAATATTTCTTTGAGGGGAACTAC GATTTGGTGAAGTTCATCAAGCTGGTGAAGGATGCAGGGCTCTATGTTCATCTCAGGATTGGTCCTTACGTCTGCGCTGAGTGGAACTTTGGAGGATTTC CGGTTTGGCTCAAGTACATTCCAGGAATCAGTTTCAGAACTGACAATGGCCCTTTCAAGGCACAAATGCAAAAATTTACTACAAAGATTGTGAACATGAT GAAAACAGAGAGGCTGTTTGAGAATCAAGGAGGTCCAATTATTCTATCTCAGATTGAGAATGAGTATGGTCCCATGGAGTATGAACTTGGTGCATCTGGT AAAGCTTACACAAAATGGGCAGCAGATATGGCTTTACAACTTGGGACTGGTGTGCCATGGGTCATGTGCAAGCAAGATGATGCCCCTGATCCTATTATTA ACGCTTGCAATGGCTTCTACTGTGACTACTACTCCCCCAACAAAGTCTACAAGCCTAAGATGTGGACCGAAGCTTGGACCGGCTGGTTTACAGAATTCGG TGGCGCAGTTCCTCATCGACCCGCGGAAGACATGGCATTCGCAGTTGCTAGATTCATACAGAAAGGAGGATCATTCATCAACTACTATATGTATCATGGT GGGACGAACTTCGGCCGAACAGCTGGCGGACCATTCATCGCGACAAGCTACGACTATGACGCTCCCCTGGACGAGTACGGCCTCCTGAGGCAGCCGAAAT GGGGACACCTGAAAGACCTGCACAGAGCGATCAAGCTGTGCGAGCCAGCTCTCGTCTCAGGAATTGCTCCCACCGTGAACCCACTCGGACGCTACCAGGA GGCTCGAGTCTTCAGAACCAAATCAGGAGTGTGTTCTGCATTCCTCGCGAACTACAACTCGAGATCGTACGCGAAAGTGTCGTTCGGGAACATGCATTAC AACCTCCCGCCGTGGTCCATCAGCATACTCCCCGACTGCAAGAACACGGTGTACAACACTGCGAGGGTTGGTGCGCAGACTTCAAGGATGAAGATGAGTC CCGTCCCTAGACGCGGCGGTGGTGGATTCTCGTGGCAAGCATATAGCGAAGAGCCCTCGGTTGACGGCAAAAAAAGCTTCACTATGGCTGGATTGCTGGA ACAGATCAACACAACTAGAGATGGTACTGACTATTTGTGGTACATGACAGATGTACAGGTAAATTCCGGAGAAAGCTTTCTCCGGAACCGGAATCATCCA GTTCTTACCGTCAAGTCTGCCGGCCATGCTCTGCACGTCTATGTCAACGACCGACTAGCAGGAACTGCTTACGGAAGTCTCGAATCTCCGAAGCTGACAT TCAGTCAAGGTGTCAACTTGAGGGCCGGCATCAACCGAATCGCCATCCTCAGCATCGCTGTCGGTCTCCCGAATGTCGGTCCGCATTTCGAGACATGGAA CGCTGGCGTCCTGGGGCCGGTGATGCTGACCGGACTAGATGAGGGCCGCAAGGACTTGACGTGGCAGAAGTGGACTTATAAGGTTGGCATGAAAGGTGAA CACCTGAGCCTTCATTCACTCAGTGGGAGCCCATCTGTTGAGTGGGCCCAAGGGTCTGTAGTTTCCCAAAGGCAGCCTCTCATGTGGTACAAGACCACAT TCAATGCTCCTGCCGGGAACGCCCCGCTGGCTTTGGACATGGCAACCATGTCCAAAGGCCAGGTGTGGATAAACGGCCAGAGCGTAGGCCGTTACTGGCC TGCGTACAAAGCAGCATCCTCAGGCGGTAGCTGCGGTGACTGCAGCTACGCGGGAACGTACAATGAGAAGAAATGCTCGAGCAACTGCGGAGAACCTTCA CAGAGATGGTACCACGTCCCTCGTTCGTGGCTGAAGCCAACCGGAAACTTACTAGTCGTTTTTGAGGAATCCGGTGGAGACCCCAACGGAATCTCTCTCG TGAGAAGAGAAGTAGATACCATATGCGCAGACATCTATGAATGGCAGCCGACATTGATGAACTACCGGATGCACGCCTCTGGGAAAGCGAACAAACCCCT CCAGCCGAAAGTCCACCTGTCTTGTGGCCCCGGTCAGAAAATGTCGTCGATTAAGTTCGCGAGCTTCGGTACACCACAGGGAACCTGCGGAAGCTACAGA CAAGGCGGATGCCACGCATTCCACTCTTATGATGCCTTCAATAAGCTTTGTGTCGGCCAGAACAGCTGCTCAGTGACAGTAGCGCCTGGAATATTCGGGG GAGATCCGTGCCCCAAGGTAATGAAGAAGCTTGCGGTCGAAGCCATCTGCAGCTGA
AA sequence Show only first row Show all	>Lus10037644 pacid=23167326 polypeptide=Lus10037644 locus=Lus10037644.g ID=Lus10037644.BGIv1.0 annot-version=v1.0 MAKNNHNVLSILISSIFFLQLVLCFSSVSATVTYDSTAIKINGQRKILISGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYFFEGNY DLVKFIKLVKDAGLYVHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKAQMQKFTTKIVNMMKTERLFENQGGPIILSQIENEYGPMEYELGASG KAYTKWAADMALQLGTGVPWVMCKQDDAPDPIINACNGFYCDYYSPNKVYKPKMWTEAWTGWFTEFGGAVPHRPAEDMAFAVARFIQKGGSFINYYMYHG GTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGIAPTVNPLGRYQEARVFRTKSGVCSAFLANYNSRSYAKVSFGNMHY NLPPWSISILPDCKNTVYNTARVGAQTSRMKMSPVPRRGGGGFSWQAYSEEPSVDGKKSFTMAGLLEQINTTRDGTDYLWYMTDVQVNSGESFLRNRNHP VLTVKSAGHALHVYVNDRLAGTAYGSLESPKLTFSQGVNLRAGINRIAILSIAVGLPNVGPHFETWNAGVLGPVMLTGLDEGRKDLTWQKWTYKVGMKGE HLSLHSLSGSPSVEWAQGSVVSQRQPLMWYKTTFNAPAGNAPLALDMATMSKGQVWINGQSVGRYWPAYKAASSGGSCGDCSYAGTYNEKKCSSNCGEPS QRWYHVPRSWLKPTGNLLVVFEESGGDPNGISLVRREVDTICADIYEWQPTLMNYRMHASGKANKPLQPKVHLSCGPGQKMSSIKFASFGTPQGTCGSYR QGGCHAFHSYDAFNKLCVGQNSCSVTVAPGIFGGDPCPKVMKKLAVEAICS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10037644 [exp]	0	1
AT1G02660			alpha/beta-Hydrolases superfam...		Lus10010031 [exp]	4.9	0.8857
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10001383 [exp]	4.9	0.8761
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	6.2	0.8996
AT2G27410	B3		Domain of unknown function (DU...		Lus10027272 [exp]	6.6	0.8596
					Lus10001828 [exp]	6.9	0.8512
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	8.1	0.8952
					Lus10036703 [exp]	9.7	0.8802
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10010373 [exp]	11.1	0.8884
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	11.2	0.8713
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10002995 [exp]	13.2	0.8247

Compare expression of checked genes

Lus10037644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.