Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55140 250 / 7e-84 Ribonuclease III family protein (.1.2) AT3G13740 242 / 2e-80 Ribonuclease III family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015626 [exp] 389 / 1e-138 AT1G55140 271 / 5e-92 Ribonuclease III family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G200300 [exp] 265 / 2e-89 AT1G55140 257 / 1e-86 Ribonuclease III family protein (.1.2) Potri.003G038400 [exp] 165 / 1e-51 AT1G55140 154 / 6e-48 Ribonuclease III family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037645 pacid=23167378 polypeptide=Lus10037645 locus=Lus10037645.g ID=Lus10037645.BGIv1.0 annot-version=v1.0 ATGACGACTGTAAGAGCTTCTTGGGACACCCAGCAGCGACTAACTTACAATCCCAACGCCCCGAGGAATCCCAACAAGAAGAAACTCGTCACAGATACCT TATCCACCACCAGTAATGCTACGACACCTTCTTCTTCATCGCCCAAGTTCACTCTGACTCCCCATTCGGTCTCGGAACTCCTCAAGCGCAACGTTCAGAG CAAAGCTGTCGTACAAGATCTCGACGATTCGTACTTGGGATGTGATGTATGGCTGCCGAGGCCACCGAAACTGGAGAAGCCTAGGTCAGCTTTCAATGCA GCCACTCTGGCATATATCGGCGATGGCATCTATGAGCTATATGCTCGACGACATTTTCTTTTCCCGCCTATGAACATCGACGAATATAATGACCGTGTAA TGGCGGTAGTACGCTGTGAAGCACAGGATGCCTTACTTCAGAAACTCAAAGAAGAAGATTTCCTATCTGCAGAAGAAAGAGGCATTCTGAAATGGGGGAA GAATGTAGGTTCAGCGAAGACACGAACGAGGAGGCGTGCAGGTTCAGCTGTTTATAACAGAGCATCTTCATTGGAAACACTAATTGGTTATCTCTACCTC ACAGATGCTAACCGTCTGGATGAAGTCATGCAAAAGCTGGGATTCTCAGCTGGTTCTTCCTCGGAGATGATCTTACATGAAACTAGCGGTAAGCCATATC CCCCTTCTGATGAGACCATCTTGATTGATAAAAAAAGTCCATGTCTGAAGTTCTGGAGATAA
AA sequence Show only first row Show all	>Lus10037645 pacid=23167378 polypeptide=Lus10037645 locus=Lus10037645.g ID=Lus10037645.BGIv1.0 annot-version=v1.0 MTTVRASWDTQQRLTYNPNAPRNPNKKKLVTDTLSTTSNATTPSSSSPKFTLTPHSVSELLKRNVQSKAVVQDLDDSYLGCDVWLPRPPKLEKPRSAFNA ATLAYIGDGIYELYARRHFLFPPMNIDEYNDRVMAVVRCEAQDALLQKLKEEDFLSAEERGILKWGKNVGSAKTRTRRRAGSAVYNRASSLETLIGYLYL TDANRLDEVMQKLGFSAGSSSEMILHETSGKPYPPSDETILIDKKSPCLKFWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55140			Ribonuclease III family protei...		Lus10037645 [exp]	0	1
AT1G10522			unknown protein		Lus10030655 [exp]	1.4	0.9438
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10009166 [exp]	4.6	0.9379
AT1G30680			toprim domain-containing prote...		Lus10023380 [exp]	4.9	0.9391
AT4G20130		PTAC14	plastid transcriptionally acti...		Lus10006942 [exp]	5.7	0.9334
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10013408 [exp]	5.7	0.9296
					Lus10006809 [exp]	6.2	0.9117
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10001450 [exp]	6.5	0.9305
AT3G18680			Amino acid kinase family prote...		Lus10033492 [exp]	6.8	0.8897
AT3G06730		TRXz, TRXP ,TRX...	thioredoxin putative plastidic...		Lus10039499 [exp]	7.3	0.9293
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10010174 [exp]	8.4	0.9331

Compare expression of checked genes

Lus10037645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.