Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55150 753 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 608 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G01540 416 / 1e-139 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 405 / 6e-135 DEAD box RNA helicase family protein (.1.2) AT3G06480 397 / 3e-127 DEAD box RNA helicase family protein (.1) AT2G47330 347 / 4e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G20920 340 / 5e-108 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G31970 314 / 4e-101 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G09620 300 / 1e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 284 / 2e-88 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015627 [exp] 851 / 0 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043334 [exp] 634 / 0 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019484 [exp] 632 / 0 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10032133 [exp] 414 / 2e-138 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032135 [exp] 410 / 6e-137 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10014553 [exp] 397 / 2e-130 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001272 [exp] 404 / 4e-129 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10009474 [exp] 382 / 1e-120 AT3G06480 744 / 0.0 DEAD box RNA helicase family protein (.1) Lus10037527 [exp] 348 / 3e-111 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038300 [exp] 789 / 0 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 635 / 0 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 631 / 0 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G347100 [exp] 416 / 2e-137 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.017G071400 [exp] 415 / 2e-137 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 402 / 1e-128 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.002G194600 [exp] 357 / 1e-114 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G003600 [exp] 347 / 5e-108 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G257400 [exp] 343 / 2e-106 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G098800 [exp] 322 / 1e-103 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10037646 pacid=23167049 polypeptide=Lus10037646 locus=Lus10037646.g ID=Lus10037646.BGIv1.0 annot-version=v1.0 ATGAGTCGATACGACAGCCGCGCCAGCGACCCTACTTCTTACCGCGAGCGAAGGAGTAATTCAGGTTTTGGTGGTGGTGGTTCGAGCTACGCTGCTGGTT CAGGACGATCGTCGTCGTCCGAGAGGCGGGACAGTAGTGCTGGTTCACCGAAAAAATCAGACCTTGATGGGTTGACTCCATTTGAGAAGAACTTCTATGT AGAATCACCTGCTGTTGCTGCAATGTCCGAGAGGGAGGTTGACGAATACAGGCTGCGCAGAGAAATCACTGTGGAAGGACGCGATATTCCGAAGCCTGTT TTGAGCTTCGAGGATGTAGGGTTTCCAGATTACGTAATGCAAGAGGTTAAAAATGCTGGCTTTAAAGAACCTACCCCTATACAGGCACAAGGATGGCCAA TGGCTTTGAAAGGTCGTGATCTTGTTGGTATTGCTGAAACTGGGTCTGGCAAGACACTTGCCTACCTGTTACCGGCGATCGTCCATGTTAATGCCCAGCC AATTCTAGCGCCTGGAGATGGTCCGATAGTGTTAGTTTTAGCCCCCACTCGAGAGCTTGCTGTCCAGATACAGCAAGAAGCTACTAAATTCGGTGCATCT TCAAGAATTAAGAATACTTGCATTTATGGTGGGGTCCCTAAGGGGCCTCAGGTTCGTGATCTACAGAAAGGCGTTGAAATTGTTATTGCTACTCCTGGAA GGTTGATTGACATGCTGGAATCCCACAACACAAACTTGCGAAGGGTCACTTACCTCGTGTTAGATGAGGCTGATCGGATGCTAGACATGGGTTTCGAGCC TCAGATGCGAAAAATTATTAACCAGATTCGACCTGACCGTCAAACCCTGTATTGGAGTGCTACTTGGCCCAAAGAGGTTGAGCAGTTGTCTAGGCAATTT CTTTACAATCCTTACAAGGTTATCATAGGGTCAGAAGATCTAAAAGCTAACCATTCAATTCGTCAACATGTGGACATTGTTTCAGAGAATCAGAAGTACA ACAAATTGGTGAAGCTACTCGAAGATATCATGGATGGAAGCCGCATTTTGATTTTCATGGATACAAAGAAAGGTTGCGACCAGATAACGAGGCAGCTCCG CATGGATGGTTGGCCCGCGCTCTCGATCCATGGGGATAAGAGCCAAGCCGAAAGGGATTGGGTGCTTTCCGAGTTCAAATCCGGGAAAAACCCTATAATG ACAGCCACCGATGTTGCTGCTCGTGGTTTAGATGTGAAGGATGTGAAATACGTGGTGAACTACGACTTTCCAGGGTCGCTGGAAGATTATGTACACCGAA TCGGTAGAACTGGAAGAGCAGGAGCGAAGGGGACCGCCTACACGTTCTTCACGGCTGCAAATGCGAGATTCGCAAAGGAGCTTATAGGCATACTGGAGGA AGCAGGGCAGAAGGTGAGTCCGGAATTGGCATCAATGGGCCGTGGTGCTCCTCCGACATCATCGGGTTATGGTAGCTACCGCGATCGTGGCAGGGGGGGC GGAGGCCGATCTTGGAGTGAGTTTAGAAGATGA
AA sequence Show only first row Show all	>Lus10037646 pacid=23167049 polypeptide=Lus10037646 locus=Lus10037646.g ID=Lus10037646.BGIv1.0 annot-version=v1.0 MSRYDSRASDPTSYRERRSNSGFGGGGSSYAAGSGRSSSSERRDSSAGSPKKSDLDGLTPFEKNFYVESPAVAAMSEREVDEYRLRREITVEGRDIPKPV LSFEDVGFPDYVMQEVKNAGFKEPTPIQAQGWPMALKGRDLVGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGAS SRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQMRKIINQIRPDRQTLYWSATWPKEVEQLSRQF LYNPYKVIIGSEDLKANHSIRQHVDIVSENQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKNPIM TATDVAARGLDVKDVKYVVNYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIGILEEAGQKVSPELASMGRGAPPTSSGYGSYRDRGRGG GGRSWSEFRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10037646 [exp]	0	1
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10015627 [exp]	1.0	0.8962
AT5G57950			26S proteasome regulatory subu...		Lus10036267 [exp]	6.7	0.8232
AT1G29370			Kinase-related protein of unkn...		Lus10004604 [exp]	7.7	0.8685
AT5G06590			unknown protein		Lus10021091 [exp]	8.1	0.8675
AT3G26990			ENTH/VHS family protein (.1)		Lus10035182 [exp]	9.5	0.8404
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	10.4	0.8620
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10022356 [exp]	11.3	0.8198
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10019235 [exp]	19.1	0.8463
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	22.1	0.8242
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10007803 [exp]	23.7	0.8257

Compare expression of checked genes

Lus10037646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.