Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55170 224 / 2e-72 unknown protein AT3G14750 121 / 3e-32 unknown protein AT1G67170 116 / 3e-30 unknown protein AT5G61920 78 / 9e-17 unknown protein AT2G30120 78 / 1e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015629 [exp] 513 / 0 AT1G55170 236 / 2e-77 unknown protein Lus10015628 [exp] 402 / 5e-143 AT1G55170 211 / 3e-68 unknown protein Lus10013698 [exp] 144 / 3e-41 AT3G14750 298 / 3e-100 unknown protein Lus10038143 [exp] 142 / 3e-40 AT3G14750 275 / 1e-91 unknown protein Lus10005563 [exp] 137 / 2e-38 AT3G14750 288 / 2e-96 unknown protein Lus10035371 [exp] 133 / 3e-37 AT1G67170 284 / 2e-95 unknown protein Lus10030976 [exp] 134 / 2e-36 AT1G67170 294 / 1e-96 unknown protein Lus10034321 [exp] 116 / 4e-30 AT1G55170 89 / 3e-20 unknown protein Lus10041450 [exp] 110 / 1e-28 AT1G55170 84 / 4e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G037900 [exp] 314 / 4e-108 AT1G55170 259 / 2e-86 unknown protein Potri.001G382700 [exp] 144 / 4e-41 AT3G14750 297 / 6e-100 unknown protein Potri.017G109700 [exp] 129 / 5e-34 AT1G67170 282 / 3e-91 unknown protein Potri.001G281400 [exp] 124 / 1e-33 AT2G30120 161 / 4e-48 unknown protein Potri.006G178100 [exp] 121 / 2e-32 AT5G61920 155 / 3e-46 unknown protein Potri.009G076700 [exp] 121 / 2e-32 AT3G14750 173 / 8e-52 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037647 pacid=23167268 polypeptide=Lus10037647 locus=Lus10037647.g ID=Lus10037647.BGIv1.0 annot-version=v1.0 ATGGCGGGGAGGAATCGGATCCCTCGTGAAGTGTACGGTGATCATTGCCATGGGTTCCCTCCTGAGAGACATCACATCCGTGGGCATCCTATGCCGCATC GTCCTCCACCTCCTCATCCTGCTTTGCTGGAGGAGGAGATCGAACGGCAGCATGTTCATATGCGGAGGCTATCGGGGGAGAATCGGAGGCTGGTTGAGGA TAGAATTGCTCTGCAGCAGGACCTTGGTGCTGCAAAGGAGGAGCTTCGCCGTATGAATATAGTGATTAGTGATATCCGTAACGAACAGGAGATGCGCTCT AGGGAGCTTATTGAAAAAGGGATGAAGCTGGAGGCTGATCTCCGAGCGACCGAGCCTTTGAAGGGTGAGGCTCTTCAATTGCGAGCGGAAGTGAAGAGGC TTAAGGATGCGAAGCAGGAGCTTGTTGCGCAGGTGCAGGGCTTGAAGAAAGATCTGGAGAGAGCTCAAGTGGAGAATAAGCAGGTTCCTGGGTTGAAGAG GGAGATTGAGGGGTTGCATAAGGACCTTATGCATGCAAGAGGTGCTATTGAATATGAAAAGCAGGCGAATGTTGAATTGATAGAGCAGCGACAAGGATTG GAGAGAAACATGGTTTCTATGGCACGGGAAGTCGAGAAGCTGCGTGCAGAACGTGTCAGTGCTACTAATCCTCGGTCGTGGGATACTGGCGGACCTTATG AACTGAAGTATGGCAACCCAGAGGGGGCTTTACCTGCTGCATATGGACATGGATATGCAACTTATATGATGGATTCGGCTGCTAGTGACGAAGGCCCTTC ATATGGAAGTGGTTCAGCTTCATGGGAGAAACACCGTATGCCACGCCGCTGA
AA sequence Show only first row Show all	>Lus10037647 pacid=23167268 polypeptide=Lus10037647 locus=Lus10037647.g ID=Lus10037647.BGIv1.0 annot-version=v1.0 MAGRNRIPREVYGDHCHGFPPERHHIRGHPMPHRPPPPHPALLEEEIERQHVHMRRLSGENRRLVEDRIALQQDLGAAKEELRRMNIVISDIRNEQEMRS RELIEKGMKLEADLRATEPLKGEALQLRAEVKRLKDAKQELVAQVQGLKKDLERAQVENKQVPGLKREIEGLHKDLMHARGAIEYEKQANVELIEQRQGL ERNMVSMAREVEKLRAERVSATNPRSWDTGGPYELKYGNPEGALPAAYGHGYATYMMDSAASDEGPSYGSGSASWEKHRMPRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55170			unknown protein		Lus10037647 [exp]	0	1
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10035627 [exp]	2.0	0.8369
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Lus10014133 [exp]	10.4	0.7949
AT3G46540			ENTH/VHS family protein (.1)		Lus10016556 [exp]	13.9	0.8493
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10020514 [exp]	26.3	0.8139
AT2G30990			Protein of unknown function (D...		Lus10033602 [exp]	39.1	0.7835
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002888 [exp]	39.1	0.8049
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Lus10038592 [exp]	40.7	0.8099
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10007914 [exp]	45.2	0.7822
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	50.5	0.7610
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10022550 [exp]	52.2	0.7983

Compare expression of checked genes

Lus10037647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.