Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33000 327 / 5e-114 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) AT5G47100 252 / 4e-85 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT4G17615 250 / 3e-84 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT4G26570 249 / 8e-84 ATCBL3 calcineurin B-like 3 (.1.2) AT5G55990 247 / 6e-83 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT5G24270 231 / 2e-76 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT1G64480 224 / 5e-74 CBL8 calcineurin B-like protein 8 (.1) AT4G16350 214 / 9e-70 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT4G26560 180 / 1e-56 CBL7 calcineurin B-like protein 7 (.1) AT4G01420 176 / 2e-55 CBL5 calcineurin B-like protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015630 [exp] 460 / 1e-166 AT4G33000 322 / 3e-112 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10018108 [exp] 256 / 2e-86 AT5G24270 328 / 1e-115 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10022407 [exp] 255 / 5e-86 AT5G24270 331 / 1e-116 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10011028 [exp] 247 / 6e-83 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10001816 [exp] 238 / 2e-79 AT1G64480 271 / 3e-93 calcineurin B-like protein 8 (.1) Lus10003191 [exp] 231 / 2e-76 AT1G64480 264 / 2e-90 calcineurin B-like protein 8 (.1) Lus10038764 [exp] 226 / 6e-75 AT5G55990 375 / 5e-134 calcineurin B-like protein 2 (.1) Lus10023069 [exp] 226 / 1e-74 AT1G64480 263 / 6e-90 calcineurin B-like protein 8 (.1) Lus10030252 [exp] 220 / 3e-72 AT5G24270 269 / 4e-92 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G037800 [exp] 342 / 3e-120 AT4G33000 286 / 5e-98 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Potri.006G230200 [exp] 312 / 3e-108 AT4G33000 271 / 4e-92 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Potri.012G015100 [exp] 258 / 3e-87 AT5G24270 333 / 2e-117 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013100 [exp] 256 / 1e-86 AT5G24270 324 / 6e-114 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.016G003500 [exp] 253 / 6e-85 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.006G002900 [exp] 252 / 1e-84 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1) Potri.001G150200 [exp] 249 / 5e-84 AT5G47100 367 / 6e-131 calcineurin B-like protein 9 (.1) Potri.001G371700 [exp] 250 / 6e-84 AT5G55990 418 / 9e-151 calcineurin B-like protein 2 (.1) Potri.011G094900 [exp] 249 / 9e-84 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2) Potri.003G084200 [exp] 249 / 1e-83 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037648 pacid=23167349 polypeptide=Lus10037648 locus=Lus10037648.g ID=Lus10037648.BGIv1.0 annot-version=v1.0 ATGGAGGGGAGATCAAGCTACTTGACGCTGGGAGAGAAGCTTTGCGCGGTTCTCATCCCTCTGATCGGCGTCTGTGAAGTCGTGGTTCTGAGCTTCGGCA GTTGCTTCGGCGATCTCGTCGGCGGCGGAGACGGTCCGCCTGTTCGGAAGTTCGCATACTCCTTCGCCGACTTCGTCCAGATAGCCAGGAACTCCGCATT TACTGTGAATGAAGTGGAGGCTCTGTTCGAGTTGTTCAAGAAAGTCAGCTGTTCTATCATCGATGATGGCCTTATCCACAAGGAAGAGCTCCATTTGGCA CTGCTGAGAACACCAGTGGGCAAGAACCTTTTCCTCGACAGGGTGTTCGATCTTTTCGATGAGAAGCAAAACGGCGTGATTGACTTTGAGGAGTTCGTGC ACTCAATCAGTGTGTTCCATCCTGGAGCTTCTGTCGAGGATAAAATCAATTTTGCGTTCCGGCTATACGATTTGAGACGAACAGGGTTCATAGAGAGAGA AGAAGTCAGGCAAATGCTGAACGCTTTCCTCTTAGAGTCCGAAGTGCAGGTCTCGGAGGCCATTCTCGAGGCCATCATAGACAAGACATTCGAGGATGCC GATGCTGATAAGGATGGGAAGATCAACAAGCAAGAATGGAAAGAGTTTGTTCTTAAGAACCCAGCCCTCCTTAAGAACATGACTCTTCCTTACTTGAGAG AGATCACAACTGTGTTCCCCAGTTTTATCTTCAACACACAAGTTGATGATTGA
AA sequence Show only first row Show all	>Lus10037648 pacid=23167349 polypeptide=Lus10037648 locus=Lus10037648.g ID=Lus10037648.BGIv1.0 annot-version=v1.0 MEGRSSYLTLGEKLCAVLIPLIGVCEVVVLSFGSCFGDLVGGGDGPPVRKFAYSFADFVQIARNSAFTVNEVEALFELFKKVSCSIIDDGLIHKEELHLA LLRTPVGKNLFLDRVFDLFDEKQNGVIDFEEFVHSISVFHPGASVEDKINFAFRLYDLRRTGFIEREEVRQMLNAFLLESEVQVSEAILEAIIDKTFEDA DADKDGKINKQEWKEFVLKNPALLKNMTLPYLREITTVFPSFIFNTQVDD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10037648 [exp]	0	1
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	3.0	0.9089
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	5.1	0.9054
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10022624 [exp]	13.4	0.8919
AT5G08560			transducin family protein / WD...		Lus10001411 [exp]	16.1	0.8849
AT3G52870			IQ calmodulin-binding motif fa...		Lus10003257 [exp]	16.8	0.7936
AT2G17070			Arabidopsis protein of unknown...		Lus10020490 [exp]	17.3	0.8723
					Lus10034731 [exp]	17.6	0.8862
AT1G04555			unknown protein		Lus10014458 [exp]	18.4	0.8932
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10021624 [exp]	21.8	0.8902
AT1G03950		VPS2.3	vacuolar protein sorting-assoc...		Lus10033914 [exp]	22.8	0.8893

Compare expression of checked genes

Lus10037648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.